Create Vignette for formatting junco vs. tern, vs. custom: addresses #66

[iaugusty]

vignette for formats

[github-actions]

Code Coverage Summary

Filename                                        Stmts    Miss  Cover    Missing
--------------------------------------------  -------  ------  -------  ------------------------------------------------------------------------------------------------------------------------------------------------------
R/a_eair_j.R                                      233      11  95.28%   33-35, 148, 174, 522, 604-607, 635
R/a_freq_combos_j.R                                80       1  98.75%   69
R/a_freq_j.R                                      339      56  83.48%   93, 99, 132-140, 153-157, 164-173, 279-287, 301-305, 311, 318-322, 650-653, 658, 664-666, 721, 755, 759-761, 784-788
R/a_freq_resp_var_j.R                              91      38  58.24%   65-70, 114-125, 153-178
R/a_freq_subcol_j.R                                76       3  96.05%   61-63
R/a_summarize_aval_chg_diff.R                     207      42  79.71%   27-34, 47, 101-102, 134, 138-140, 147, 152-154, 179, 198-204, 407, 411, 415, 430-433, 446, 449, 465, 488-494, 507
R/a_summarize_ex_j.R                              107      17  84.11%   80, 100-107, 213, 217, 221, 249-253, 281
R/analyze_values.R                                 11       0  100.00%
R/ancova_rbmi.R                                    70       0  100.00%
R/ancova.R                                         63       1  98.41%   74
R/blank_line.R                                     26       0  100.00%
R/cmp_functions.R                                  28       2  92.86%   59, 70
R/column_stats.R                                  139      40  71.22%   30-48, 89, 107-116, 123-125, 127-139
R/colwidths.R                                     304      96  68.42%   19, 33-102, 107, 131, 253, 260, 306, 324-343, 352-366, 370-376, 381, 392, 404-412, 442-453, 506, 513
R/count_denom_fraction.R                           28       7  75.00%   81, 86-89, 93, 115
R/coxph_hr.R                                       91       0  100.00%
R/coxreg_multivar.R                                58       0  100.00%
R/dps_markup_to_rtf.R                              31      10  67.74%   93-105
R/estimate_proportion_diff.R                       45       0  100.00%
R/event_free.R                                     44       0  100.00%
R/get_ref_info.R                                   14       0  100.00%
R/h_eair_funs.R                                    21       0  100.00%
R/h_freq_funs.R                                   303      51  83.17%   29, 124, 140, 210-219, 241-244, 247-250, 316-322, 362, 366, 370, 374, 378, 418, 431-432, 477, 496, 502, 611, 670, 672, 676, 680-681, 685-690, 710, 731
R/jjcs_num_formats.R                               48       0  100.00%
R/jjcsformats.R                                   238      81  65.97%   28-38, 38-39, 39-40, 40-50, 56-58, 58-62, 64-65, 70-92, 92-97, 99-105, 157, 169, 178, 181, 186, 191, 283, 293, 306, 308, 311, 314, 359
R/junco_utils_default_stats_formats_labels.R       48       0  100.00%
R/kaplan_meier.R                                   48       0  100.00%
R/lsmeans.R                                       128       7  94.53%   55-59, 76-77
R/mmrm_rbmi.R                                      61       0  100.00%
R/mmrm.R                                          104       4  96.15%   42, 64, 104, 155
R/odds_ratio.R                                    164      12  92.68%   118-128, 162-165
R/pool_rbmi.R                                      44      27  38.64%   8-40
R/proportions.R                                    60       1  98.33%   132
R/pruning_functions.R                             175       8  95.43%   169, 316, 319, 355, 365, 401, 442-443
R/rbmi.R                                          124      74  40.32%   125, 131, 375-468
R/relative_risk.R                                  97       5  94.85%   228, 242-245
R/remove_col_count.R                                4       0  100.00%
R/resp01_functions.R                              159      28  82.39%   143-151, 178, 341, 344-353, 355-361
R/s_functions.R                                    27       4  85.19%   4, 7, 16-17
R/sorting_functions.R                              49       2  95.92%   175, 189
R/span_var_map.R                                   15       0  100.00%
R/split_functions.R                               122      31  74.59%   62, 69, 77-95, 103, 106, 113, 116-120, 126, 134-139
R/summarize_ancova.R                              240      52  78.33%   34, 91, 94-117, 120, 124-132, 156-163, 230-233, 241-248
R/summarize_mmrm.R                                 79       0  100.00%
R/summarize_row_counts.R                            8       0  100.00%
R/tabulate_lsmeans_wide.R                         134       0  100.00%
R/tabulate_lsmeans.R                               68       4  94.12%   86-89
R/tabulate_rbmi.R                                 111       0  100.00%
R/tern_utils_default_stats_formats_labels.R       178      17  90.45%   61-68, 71-74, 215-216, 276-277, 326
R/test_proportion_diff.R                           77       1  98.70%   197
R/title_footers.R                                  53      10  81.13%   5, 19-25, 90, 98, 140, 144
R/tt_to_tblfile.R                                 480      49  89.79%   38, 41, 44, 81, 96, 99, 118, 146, 162-176, 198, 208-214, 321-325, 349, 355-357, 361-364, 458-463, 577, 676
R/unicodify.R                                       4       0  100.00%
R/visit_levels.R                                    8       0  100.00%
TOTAL                                            5564     792  85.77%

Diff against main

Filename      Stmts    Miss  Cover
----------  -------  ------  --------
TOTAL             0       0  +100.00%

Results for commit: d79ebfe

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results

[github-actions]

Unit Test Performance Difference

Test Suite	$Status$	Time on main	$±Time$	$±Tests$	$±Skipped$	$±Failures$	$±Errors$
count_pct	💚	$7.78$	$-3.92$	$-14$	$+10$	$0$	$0$
rbmi	💚	$17.46$	$-11.80$	$-10$	$+5$	$0$	$0$

Additional test case details

Test Suite	$Status$	Time on main	$±Time$	Test Case
count_pct	💚	$2.13$	$-1.09$	a_freq_j_as_cfun
count_pct	💚	$1.72$	$-1.21$	a_freq_j_with_N_subgroup_as_denom
rbmi	💚	$9.30$	$-3.75$	Parallisation_works_with_rbmi_analyse_and_produces_identical_results
rbmi	💚	$2.05$	$-2.04$	make_rbmi_cluster_exports_objects_and_loads_packages
rbmi	💚	$1.98$	$-1.96$	make_rbmi_cluster_handles_existing_cluster
rbmi	💚	$1.96$	$-1.95$	make_rbmi_cluster_loads_rbmi_namespaces_correctly
rbmi	💚	$2.09$	$-2.08$	par_lapply_works_with_and_without_cluster

Results for commit 230d894

♻️ This comment has been updated with latest results.

[munoztd0]

depends if we change the default behavior, to discuss