Cran Release as Main

.Rbuildignore

@@ -47,5 +47,7 @@ pkgdown
 ^output$
 ^junco_tlg_template_scripts$
 ^[^/]*\.R$
-^.*\.rtf$
-^CHANGELOG\.md$
+^\.vscode$
+^[.]?air[.]toml$
+^CHANGELOG\.md$
+^air\.toml$

.covrignore

@@ -1,4 +1,2 @@
-# Development utilities
-R/utils.R
 R/zzz.R
 

.github/workflows/check.yaml

@@ -0,0 +1,59 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  push:
+    branches:
+      - main
+
+name: check
+
+permissions: read-all
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+#          - {os: macos-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - name: Install rbmi
+        run: install.packages('rbmi', repos = c('https://insightsengineering.r-universe.dev'))
+        shell: Rscript {0}
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck, rbmi=?ignore
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'

.github/workflows/check_CRAN.yml

@@ -0,0 +1,60 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  push:
+    branches:
+      - main
+
+name: check-CRAN
+
+permissions: read-all
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+#          - {os: macos-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - name: Install rbmi
+        run: install.packages('rbmi', repos = c('https://insightsengineering.r-universe.dev'))
+        shell: Rscript {0}
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck, rbmi=?ignore
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'
+          args: 'c("--as-cran", "--no-manual")'

.github/workflows/inspect.yaml

@@ -1,5 +1,5 @@
 ---
-name: Check 🛠
+name: Inspection 🛠
 
 on:
   pull_request:
@@ -17,73 +17,73 @@ jobs:
   audit:
     name: Audit Dependencies 🕵️‍♂️
     uses: insightsengineering/r.pkg.template/.github/workflows/audit.yaml@main
-  r-cmd:
-    name: R CMD Check 🧬
-    uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main
-    secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
-    with:
-      deps-installation-method: setup-r-dependencies
-      additional-env-vars: |
-        _R_CHECK_CRAN_INCOMING_REMOTE_=false
-      additional-r-cmd-check-params: --as-cran
-      enforce-note-blocklist: true
-      note-blocklist: |
-        checking dependencies in R code .* NOTE
-        checking R code for possible problems .* NOTE
-        checking examples .* NOTE
-        checking Rd line widths .* NOTE
-        checking S3 generic/method consistency .* NOTE
-        checking Rd .usage sections .* NOTE
-        checking for unstated dependencies in vignettes .* NOTE
-        checking top-level files .* NOTE
-      unit-test-report-brand: >-
-        https://raw.githubusercontent.com/johnsonandjohnson/junco/main/man/figures/logo.png
-  r-cmd-non-cran:
-    name: R CMD Check (non-CRAN) 🧬
-    uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main
-    secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
-    with:
-      deps-installation-method: setup-r-dependencies
-      additional-env-vars: |
-        _R_CHECK_CRAN_INCOMING_REMOTE_=false
-        NOT_CRAN=true
-      enforce-note-blocklist: true
-      concurrency-group: non-cran
-      unit-test-report-directory: unit-test-report-non-cran
-      note-blocklist: |
-        checking dependencies in R code .* NOTE
-        checking R code for possible problems .* NOTE
-        checking examples .* NOTE
-        checking Rd line widths .* NOTE
-        checking S3 generic/method consistency .* NOTE
-        checking Rd .usage sections .* NOTE
-        checking for unstated dependencies in vignettes .* NOTE
-        checking top-level files .* NOTE
-      unit-test-report-brand: >-
-        https://raw.githubusercontent.com/johnsonandjohnson/junco/main/man/figures/logo.png
-  coverage:
-     name: Coverage 📔
-     uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main
-     secrets:
-       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
-     with:
-       deps-installation-method: setup-r-dependencies
-       additional-env-vars: |
-         NOT_CRAN=true
+#  r-cmd:
+#    name: R CMD Check 🧬
+#    uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main
+#    secrets:
+#      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+#    with:
+#      deps-installation-method: setup-r-dependencies
+#      additional-env-vars: |
+#        _R_CHECK_CRAN_INCOMING_REMOTE_=false
+#      additional-r-cmd-check-params: --as-cran
+#      enforce-note-blocklist: true
+#      note-blocklist: |
+#        checking dependencies in R code .* NOTE
+#        checking R code for possible problems .* NOTE
+#        checking examples .* NOTE
+#        checking Rd line widths .* NOTE
+#        checking S3 generic/method consistency .* NOTE
+#        checking Rd .usage sections .* NOTE
+#        checking for unstated dependencies in vignettes .* NOTE
+#        checking top-level files .* NOTE
+#      unit-test-report-brand: >-
+#        https://raw.githubusercontent.com/johnsonandjohnson/junco/main/man/figures/logo.png
+#  r-cmd-non-cran:
+#    name: R CMD Check (non-CRAN) 🧬
+#    uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main
+#    secrets:
+#      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+#    with:
+#      deps-installation-method: setup-r-dependencies
+#      additional-env-vars: |
+#        _R_CHECK_CRAN_INCOMING_REMOTE_=false
+#        NOT_CRAN=true
+#      enforce-note-blocklist: true
+#      concurrency-group: non-cran
+#      unit-test-report-directory: unit-test-report-non-cran
+#      note-blocklist: |
+#        checking dependencies in R code .* NOTE
+#        checking R code for possible problems .* NOTE
+#        checking examples .* NOTE
+#        checking Rd line widths .* NOTE
+#        checking S3 generic/method consistency .* NOTE
+#        checking Rd .usage sections .* NOTE
+#        checking for unstated dependencies in vignettes .* NOTE
+#        checking top-level files .* NOTE
+#      unit-test-report-brand: >-
+#        https://raw.githubusercontent.com/johnsonandjohnson/junco/main/man/figures/logo.png
+#  coverage:
+#     name: Coverage 📔
+#     uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main
+#     secrets:
+#       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+#     with:
+#       deps-installation-method: setup-r-dependencies
+#       additional-env-vars: |
+#         NOT_CRAN=true
   linter:
     if: github.event_name != 'push'
     name: Linter 🦸‍♀️
     uses: johnsonandjohnson/pharmaversesdtmjnj/.github/workflows/lint.yaml@main
-  roxygen:
-    name: Roxygen 🅾
-    uses: insightsengineering/r.pkg.template/.github/workflows/roxygen.yaml@main
-    secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
-    with:
-      deps-installation-method: setup-r-dependencies
-      auto-update: true
+#  roxygen:
+#    name: Roxygen 🅾
+#    uses: insightsengineering/r.pkg.template/.github/workflows/roxygen.yaml@main
+#    secrets:
+#      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+#    with:
+#      deps-installation-method: setup-r-dependencies
+#      auto-update: true
   gitleaks:
     name: gitleaks 💧
     uses: insightsengineering/r.pkg.template/.github/workflows/gitleaks.yaml@main
@@ -108,14 +108,14 @@ jobs:
   licenses:
     name: License Check 🃏
     uses: insightsengineering/r.pkg.template/.github/workflows/licenses.yaml@main
-  style:
-    if: github.event_name != 'push'
-    name: Style Check 👗
-    uses: insightsengineering/r.pkg.template/.github/workflows/style.yaml@main
-    with:
-      auto-update: true
-    secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+#  style:
+#    if: github.event_name != 'push'
+#    name: Style Check 👗
+#    uses: insightsengineering/r.pkg.template/.github/workflows/style.yaml@main
+#    with:
+#      auto-update: true
+#    secrets:
+#      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
   grammar:
     if: github.event_name != 'push'
     name: Grammar Check 🔤

.github/workflows/pkgdown.yaml

@@ -35,10 +35,16 @@ jobs:
       - uses: r-lib/actions/setup-r@v2
         with:
           use-public-rspm: true
+          extra-repositories: |
+            https://insightsengineering.r-universe.dev/
+
+      - name: Install rbmi
+        run: install.packages('rbmi', repos = c('https://insightsengineering.r-universe.dev'))
+        shell: Rscript {0}
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: any::[email protected], local::.
+          extra-packages: any::[email protected], local::.,  rbmi=?ignore
           needs: website
 
       - name: Build site