v2.1.1

Upgrades

• New tutorial on identification of cavity adjacent cells feature
• New guide on IVEN2 outputs.

v2.1.0

Upgrades

• User can define the k-value for the automatic thresholding values (TextBox entry in thresholding selection process)
• Check for cases where cells have been chosen as all inside/outside cells whilst opting for cell position dependent automatic threshold calculation. If this criteria is met, the thresholding method is automatically changed to automatic cell classification independent.
• Updated tutorial video for IVEN analysis

Bug fixes

• Removal of threshold column in output file as this was mis-leading for the automatic thresholding method with cell classification dependent values.

v2.0.0

New version of the Python version of IVEN (v2.0.0)

• Improvements:
• Flexible data import
• GUI for inside/outside cell classification with cell property displays
• GUI for cavity adjacent cell approximation
• GUI for threshold method selection
• Identification of cavity adjacent cells
• Output of all cell-neighbour distances in IVEN2dist_....csv files
• Display of final results/properties using display_final_fig.py
• Tutorials for running analysis and final figure display

Bug fixes

• Selection of threshold value when using the automatic, cell fate dependent threshold
• Previously both cells had to be outside to use the outside cell threshold, this was not consistent with the previous MATLAB version and has now been changed. i.e. if cell1 or cell2 is an outside cell, use the outside threshold.

MATLAB version discontinued, see v1.0.0 for MATLAB files and tutorials

v1.0.0

Initial release of IVEN. See published journal article

https://doi.org/10.1371/journal.pbio.3001345

Features:

• MATLAB version
• Python version
• MATLAB batch
• Tutorials
• Example data