IMPORTANT: ALL the code need to run under PHP server

#Introduction

(1) Directory

1. ./js: is used to store all the javascript file

2. ./pathFiles: path File data download from Reactome

3. ./jqueryLib: some Jquery related library

4. ./Expression: expression data from our partner

5. ./Data: to store generate hierarchical pathway file for a default species

   => humanOrtholog.html => orthologWithProtein.html

6. cut Hierarchical pathway into sub-pathways

   => mainOrthology.html In its ortholog.js File you need to change Turtle Gallus Alligator for generating each data in hierarchical structure.

7. Change Expression Data with two status value into gene expression ratio

   => mainTransformExpRatio.html