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metabolitics
metabolitics Publicpip-package which implements an algorithm which processes metabolic datasets.
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Hierarchical-Supervised-Learners
Hierarchical-Supervised-Learners PublicArtifact repository for the paper "Scalable Classification of Organisms into a Taxonomy Using Hierarchical Supervised Learners", Journal of Bioinformatics and Computational Biology, 18(05), 2050026…
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- metabolic-network-biomarker-benchmarking Public
A comprehensive benchmarking framework for metabolic network-based biomarker discovery integrating transcriptomics, metabolomics, and genome-scale metabolic models (GEMs). Includes multi-omics integration, constraint-based modeling, and evaluation of predictive performance, network rewiring, and biomarker stability.
itu-bioinformatics-database-lab/metabolic-network-biomarker-benchmarking’s past year of commit activity - Progress-Report-3-files Public
itu-bioinformatics-database-lab/Progress-Report-3-files’s past year of commit activity - MetabOmicsWeb Public
Implementation of the MetabOmics platform, including both API and client-side codebases for integrated metabolomics data analysis and visualization.
itu-bioinformatics-database-lab/MetabOmicsWeb’s past year of commit activity - CovMutEx Public
itu-bioinformatics-database-lab/CovMutEx’s past year of commit activity - FluxPRS-HazardAnalysis Public
A reproducible framework for computing Cox proportional hazard ratios from metabolomics, polygenic risk scores (PRS), and Metabolitics-derived reaction/pathway perturbation scores.
itu-bioinformatics-database-lab/FluxPRS-HazardAnalysis’s past year of commit activity - biomarker-benchmark-results-explorer Public
This repository contains a Streamlit python app dynamic exploration of results obtained from MO-BICC Bench — *Multi-Omics Biomarker Cross-Cohort Benchmark* Study.
itu-bioinformatics-database-lab/biomarker-benchmark-results-explorer’s past year of commit activity - biomarker-benchmark Public
Official repository for the paper “When Complexity Doesn’t Pay: Benchmarking Deep Learning and Ensemble Methods for Biomarker Discovery.” Contains analysis scripts, workflows, and result visualizations for benchmarking 27 feature selection methods across multi-omics datasets.
itu-bioinformatics-database-lab/biomarker-benchmark’s past year of commit activity
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