Search results

Request for correction: Nucleotide Transformer entry in OpenSciFlow model landscape

Status: Open.

#146 In instadeepai/nucleotide-transformer;

· kkkniengLiu opened on Jul 6, 2026

Reproducing the homology-aware train/val/test split generation workflow

Status: Open.

#145 In instadeepai/nucleotide-transformer;

· Liujh0223 opened on Jun 10, 2026

Title: Mismatch between “768 + 6 × 128 = 1536” and observed implementation behavior

Status: Open.

#144 In instadeepai/nucleotide-transformer;

· Zhaooooooooooo opened on Apr 26, 2026

Questions about embedding layer selection and padding strategy in NTv3-650M-pre

Status: Open.

#143 In instadeepai/nucleotide-transformer;

· LudensZhang opened on Mar 5, 2026

inclusion of <cls> token in the pretraining procedure

Status: Open.

#142 In instadeepai/nucleotide-transformer;

· urlicht opened on Mar 4, 2026

Make torch installation optional and remove duplicate jax dependency

Status: Open.

#139 In instadeepai/nucleotide-transformer;

· sboshar opened on Feb 24, 2026

Make torch installation optional

Status: Open.

#138 In instadeepai/nucleotide-transformer;

· martinp7 opened on Feb 23, 2026

Duplicated jax in install_requires

Status: Open.

#137 In instadeepai/nucleotide-transformer;

· martinp7 opened on Feb 23, 2026

Technical Clarifications on Post-training: Clipping Logic, Stride Geometry, and Metric Scaling (log1p)

Status: Open.

#134 In instadeepai/nucleotide-transformer;

· ChengYe97 opened on Feb 4, 2026

Low confidence at prediction boundaries

Status: Open.

#120 In instadeepai/nucleotide-transformer;

· calengil opened on Nov 20, 2025

How to derive a GTF file from the matrix output by SegmentNT?

Status: Open.

#118 In instadeepai/nucleotide-transformer;

· komais opened on Nov 3, 2025