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69 Open 126 Closed
69 Open 126 Closed
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Issues list

use exact_mapping to show FHIR resources in LinkML model? linkml Issues that require linkml development
#264 opened Mar 20, 2025 by lopierra
@lopierra
Knowledge Graph: Integrate Monarch Initiative KG for Disease and Phenotype Associations
#263 opened Mar 18, 2025 by madanucd Y5 Tasks - End of March 2025
@madanucd
Annotation of the Data (Trish Whetzel) IngestPipeline Ingest Pipeline in collab with BDC
#261 opened Feb 28, 2025 by tursynay Y5 Tasks - End of May 2025
@twhetzel
2
Running all data through pipeline to produce a harmonized whole (Corey, Stephen, Pierette) IngestPipeline Ingest Pipeline in collab with BDC
#260 opened Feb 28, 2025 by tursynay
10 tasks
Y5 Tasks - End of July 2025
@lopierra
Execution and Deployment pipeline (Patrick and Stephen) IngestPipeline Ingest Pipeline in collab with BDC
#259 opened Feb 28, 2025 by tursynay
2 tasks
Y5 Tasks - End of July 2025
Complex Data Mapper IngestPipeline Ingest Pipeline in collab with BDC
#258 opened Feb 28, 2025 by tursynay
2 tasks
Y5 Tasks - End of June 2025
Simple Data Cleaner (Patrick) IngestPipeline Ingest Pipeline in collab with BDC
#257 opened Feb 28, 2025 by tursynay
5 tasks
Y5 Tasks - End of April 2025
LinkML Mapper (Corey) IngestPipeline Ingest Pipeline in collab with BDC
#256 opened Feb 28, 2025 by tursynay
1 of 18 tasks
Y5 Tasks - End of June 2025
Schema Data Map IngestPipeline Ingest Pipeline in collab with BDC
#255 opened Feb 28, 2025 by tursynay
2 tasks
Y5 Tasks - End of June 2025
Schema Sheets for Data Dictionary (Trish) IngestPipeline Ingest Pipeline in collab with BDC
#254 opened Feb 28, 2025 by tursynay
1 task
Y5 Tasks - End of May 2025
@twhetzel
Schema Validator (Madan) IngestPipeline Ingest Pipeline in collab with BDC
#253 opened Feb 28, 2025 by tursynay
8 tasks
Y5 Tasks - End of May 2025
@madanucd
Schema Automator (Trish and Corey) IngestPipeline Ingest Pipeline in collab with BDC
#252 opened Feb 28, 2025 by tursynay
13 tasks
Y5 Tasks - End of May 2025
@twhetzel
Ingest-Wide Synthetic Data Set (Corey, Patrick and Madan) IngestPipeline Ingest Pipeline in collab with BDC
#251 opened Feb 28, 2025 by tursynay
2 tasks
Y5 Tasks - End of May 2025
@madanucd
Ingest-Wide Toy Data Set (Patrick and Corey) IngestPipeline Ingest Pipeline in collab with BDC
#250 opened Feb 28, 2025 by tursynay
1 of 2 tasks
Y5 Tasks - End of April 2025
Joint Working Repository (Patrick Golden) IngestPipeline Ingest Pipeline in collab with BDC
#249 opened Feb 28, 2025 by tursynay
1 of 5 tasks
Y5 Tasks - End of April 2025
add more information to portal docs about how clinical data are harmonized/journey of a dataset
#248 opened Feb 13, 2025 by lopierra
update contributor guide
#247 opened Feb 13, 2025 by lopierra
Consider whether the input data file formatting assumptions need to be parametrized in the code to handle other varieties of files, e.g. CSV or Excel files where the search data is in another sheet or the first sheet but another column.
#243 opened Feb 4, 2025 by tursynay Y5 Tasks - End of April 2025
Include other methods to download ontology content and convert to a SQLite database using semsql
#242 opened Feb 4, 2025 by tursynay Y5 Tasks - End of April 2025
Add method to identify and update to new ontology version for oaklib
#241 opened Feb 4, 2025 by tursynay Y5 Tasks - End of March 2025
@twhetzel
Add a requirements.txt file to include which Python packages need to be installed
#240 opened Feb 4, 2025 by tursynay Y5 Tasks - End of March 2025
@twhetzel
Develop sets of Activity metadata fields for different activity types Assay
#237 opened Jan 22, 2025 by lopierra Y5 Tasks - End of March 2025
@lopierra
1
Reorganize/clean up LinkML model linkml Issues that require linkml development
#235 opened Jan 17, 2025 by lopierra Y5 Tasks - End of February 2025
@lopierra @madanucd
3
Review HTP report on HPO/MONDO annotations Harmonica harmonization
#232 opened Jan 14, 2025 by lopierra
1 of 3 tasks
@lopierra
2
Evaluate and decide one INCLUDE LinkML Validator options linkml Issues that require linkml development
#231 opened Jan 14, 2025 by tursynay
@madanucd
1
ProTip! Adding no:label will show everything without a label.