lasso_AF_BG

Search for interesting lasso proteins in AF

clusters -- have clusters with structure of gln at least 2.

clusters2 (lassos_clusters_most_interesting.txt, fasta) -- subset of clusters which have lasso with at least 4 crossings

Name		Name	Last commit message	Last commit date
Latest commit History 10 Commits
align		align
cifs_from_pdb		cifs_from_pdb
clusters		clusters
clusters2		clusters2
clusters3		clusters3
fasta		fasta
10_align_from_lassoprot.py		10_align_from_lassoprot.py
10_visualize_surfaces.py		10_visualize_surfaces.py
1_get_proteins.py		1_get_proteins.py
2_cluster.py		2_cluster.py
3_filter_clusters.py		3_filter_clusters.py
4_lasso_breakdown_clusters.py		4_lasso_breakdown_clusters.py
5_get_data_from_uniprot.py		5_get_data_from_uniprot.py
6_align_clusters.sh		6_align_clusters.sh
7_download_cifs.py		7_download_cifs.py
8_cys_conservation.py		8_cys_conservation.py
9_plddt_ranking.py		9_plddt_ranking.py
README.md		README.md
aligned.txt		aligned.txt
clustalo.py		clustalo.py
clustered.txt		clustered.txt
clusters.txt		clusters.txt
domains.txt		domains.txt
draw_tree.py		draw_tree.py
failed_downloads.txt		failed_downloads.txt
lassos_clusters.txt		lassos_clusters.txt
lassos_clusters_most_interesting.txt		lassos_clusters_most_interesting.txt
lassos_clusters_nontrivial.txt		lassos_clusters_nontrivial.txt
lassos_surfaces_no_dupl.tsv		lassos_surfaces_no_dupl.tsv
plddt_ranking.txt		plddt_ranking.txt
print_matrix.py		print_matrix.py
protein2clusters_mapping.txt		protein2clusters_mapping.txt
proteins_from_lassoprot.txt		proteins_from_lassoprot.txt
pymol_superimpose.pml		pymol_superimpose.pml
representatives_fasta.txt		representatives_fasta.txt
result_file.tsv		result_file.tsv
sdomains.txt		sdomains.txt
transform_original_data.py		transform_original_data.py

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