Fix quoting in "pytest" GitHub Actions workflow #2427
Workflow file for this run
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| name: Tests | |
| on: | |
| # Uncomment this entry only to debug the workflow | |
| pull_request: | |
| branches: [ main ] | |
| pull_request_target: | |
| branches: [ main ] | |
| types: [ labeled, opened, reopened, synchronize ] | |
| # 05:00 UTC = 06:00 CET = 07:00 CEST | |
| schedule: | |
| - cron: "0 5 * * *" | |
| # Cancel previous runs that have not completed | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| env: | |
| GAMS_VERSION: 43.4.1 # First version including a macOS arm64 distribution | |
| depth: 100 # Must be large enough to include the most recent release | |
| label: "safe to test" | |
| jobs: | |
| check: | |
| name: check permissions | |
| runs-on: ubuntu-latest | |
| steps: | |
| - if: > | |
| !( | |
| github.event_name == 'schedule' | |
| || github.repository == github.event.pull_request.head.repo.full_name | |
| || contains(github.event.pull_request.labels.*.name, env.label) | |
| ) | |
| run: | | |
| echo "Pytest workflow will not run for branch in fork without label \`${{ env.label }}\`." >>$GITHUB_STEP_SUMMARY | |
| exit 1 | |
| pytest: | |
| needs: [ check ] | |
| strategy: | |
| matrix: | |
| os: | |
| - macos-13 | |
| - macos-latest | |
| - ubuntu-latest | |
| - windows-latest | |
| python-version: | |
| - "3.9" # Earliest version supported by message_ix | |
| - "3.10" | |
| - "3.11" | |
| - "3.12" | |
| - "3.13" # Latest version supported by message_ix | |
| # Below this comment are newly released or development versions of | |
| # Python. For these versions, binary wheels are not available for some | |
| # dependencies, e.g. llvmlite, numba, numpy, and/or pandas. Compiling | |
| # these on the job runner requires a more elaborate build environment, | |
| # currently out of scope for the message_ix project. | |
| # - "3.14.0-alpha.1" # Development version | |
| exclude: | |
| # Specific version combinations that are invalid / not to be used | |
| # No arm64 distributions of JPype for these Pythons | |
| - { os: macos-latest, python-version: "3.9" } | |
| # Redundant with macos-latest | |
| - { os: macos-13, python-version: "3.10" } | |
| - { os: macos-13, python-version: "3.11" } | |
| - { os: macos-13, python-version: "3.12" } | |
| - { os: macos-13, python-version: "3.13" } | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| name: ${{ matrix.os }}-py${{ matrix.python-version }} | |
| steps: | |
| - name: Check out message_ix | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: ${{ env.depth }} | |
| ref: ${{ github.event_name != 'pull_request_target' && github.ref || github.event.pull_request.head.sha }} | |
| - name: Fetch tags (for setuptools-scm) | |
| run: git fetch --tags --depth=${{ env.depth }} | |
| - name: Set up uv, Python | |
| uses: astral-sh/setup-uv@v5 | |
| with: | |
| cache-dependency-glob: "**/pyproject.toml" | |
| python-version: ${{ matrix.python-version }} | |
| - uses: ts-graphviz/setup-graphviz@v2 | |
| # Work around ts-graphviz/setup-graphviz#630 | |
| if: matrix.os != 'macos-13' | |
| - name: Cache GAMS installer | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| gams | |
| key: ${{ matrix.os }}-gams${{ env.GAMS_VERSION }} | |
| restore-keys: | | |
| ${{ matrix.os }}- | |
| - uses: iiasa/actions/setup-gams@main | |
| with: | |
| version: ${{ env.GAMS_VERSION }} | |
| license: ${{ secrets.GAMS_LICENSE }} | |
| - name: Install the package and dependencies | |
| # By default, the below installs ixmp from the main branch. To run against | |
| # other code, e.g. other branches for open PRs), temporarily edit as | |
| # appropriate. DO NOT merge such changes to `main`. | |
| run: | | |
| uv pip install --upgrade "ixmp @ git+https://github.com/iiasa/ixmp.git@main" | |
| uv pip install .[tests] | |
| - name: Run test suite using pytest | |
| env: | |
| # For test_cli.test_dl; see code in message_ix.cli.dl | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| pytest message_ix \ | |
| -m "not nightly and not tutorial" \ | |
| --color=yes --durations=20 -rA --verbose \ | |
| --cov-report=xml \ | |
| --numprocesses=auto --dist=loadgroup | |
| shell: bash | |
| - name: Upload test coverage to Codecov.io | |
| uses: codecov/codecov-action@v5 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| tutorials: | |
| needs: [ check ] | |
| strategy: | |
| matrix: | |
| os: | |
| - macos-latest | |
| - ubuntu-latest | |
| - windows-latest | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| name: ${{ matrix.os }} tutorials | |
| steps: | |
| - name: Check out message_ix | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: ${{ env.depth }} | |
| ref: ${{ github.event_name != 'pull_request_target' && github.ref || github.event.pull_request.head.sha }} | |
| - name: Set up uv, Python | |
| uses: astral-sh/setup-uv@v5 | |
| with: | |
| cache-dependency-glob: "**/pyproject.toml" | |
| python-version: "3.13" | |
| - name: Set RETICULATE_PYTHON | |
| # Retrieve the Python executable set up above | |
| run: echo "RETICULATE_PYTHON=$(uv python find)" >> "$GITHUB_ENV" | |
| shell: bash | |
| - uses: r-lib/actions/setup-r@v2 | |
| id: setup-r | |
| with: | |
| windows-path-include-rtools: false | |
| - name: Cache GAMS installer and R packages | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| gams | |
| ${{ env.R_LIBS_USER }} | |
| key: tutorial-${{ matrix.os }}-gams${{ env.GAMS_VERSION }}-R${{ steps.setup-r.outputs.installed-r-version }} | |
| restore-keys: | | |
| tutorial-${{ matrix.os }}-gams${{ env.GAMS_VERSION }}- | |
| tutorial-${{ matrix.os }}- | |
| - uses: iiasa/actions/setup-gams@main | |
| with: | |
| version: ${{ env.GAMS_VERSION }} | |
| license: ${{ secrets.GAMS_LICENSE }} | |
| - name: Install the package and dependencies | |
| # By default, the below installs ixmp from the main branch. To run against | |
| # other code, e.g. other branches for open PRs), temporarily edit as | |
| # appropriate. DO NOT merge such changes to `main`. | |
| run: | | |
| uv pip install --upgrade "ixmp @ git+https://github.com/iiasa/ixmp.git@main" | |
| uv pip install .[tests] | |
| - name: Install R dependencies and tutorial requirements | |
| run: | | |
| install.packages(c("dplyr", "IRkernel", "reticulate")) | |
| IRkernel::installspec() | |
| shell: Rscript {0} | |
| - name: Run test suite using pytest | |
| run: | | |
| pytest message_ix \ | |
| -m "tutorial" \ | |
| --color=yes --durations=20 -rA --verbose \ | |
| --cov-report=xml \ | |
| --numprocesses=auto --dist=loadgroup | |
| shell: bash | |
| - name: Upload test coverage to Codecov.io | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} # required | |
| pre-commit: | |
| name: Code quality | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event_name != 'pull_request_target' && github.ref || github.event.pull_request.head.sha }} | |
| - uses: astral-sh/setup-uv@v5 | |
| with: { cache-dependency-glob: "**/pyproject.toml" } | |
| - uses: actions/cache@v4 | |
| with: | |
| path: ~/.cache/pre-commit | |
| key: pre-commit|${{ env.UV_PYTHON }}|${{ hashFiles('.pre-commit-config.yaml') }} | |
| lookup-only: ${{ github.event_name == 'schedule' }} # Set 'true' to recreate cache | |
| - run: uvx pre-commit run --all-files --color=always --show-diff-on-failure |