Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add section 'requirements for processing modules' #17

Open
wants to merge 2 commits into
base: main
Choose a base branch
from
Open
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
62 changes: 61 additions & 1 deletion scenario-databases.rst
Original file line number Diff line number Diff line change
Expand Up @@ -81,6 +81,66 @@ The region-aggregation and validation is configured via a project-specific GitHu
repository, usually named `https://github.com/iiasa/<project>-workflow`_. Please contact
the respective project managers or the Scenario Services team if you need access.

The workflow for processing files uploaded via the IIASA Scenario Explorer
is implemented in a modular fashion.
This makes it straightforward to execute programs, code and tools developed
by (non-IIASA) research partners as part of the processing workflow.

Requirements for processing modules
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

Any module (a.k.a. program, code or tool) must adhere
to the following standards of best-practice software development.
The aim of these guidelines is to ensure reliability of our services,
minimize maintenance requirements, and guarantee reproducibility of results
across platforms.

General requirements
````````````````````

- The program, code or tool must be implemented in Python (≥3.10) or R;
compiled executables are not acceptable for security reasons
- Distribution of the source code
- via an online version-controlled repository
(preferably GitHub) to which the IIASA admin team has access; or
- installation via a package manager (pip, conda, CRAN).
- The program must run on Debian (preferably Ubuntu)
- The dependencies must be clearly stated,
e.g. as Dockerfile (describing execution environment, library dependencies etc.)
Python package dependencies according to packaging user guide (e.g. as environment.yml, requirements.txt etc.)
R dependencies
- The license must be clearly stated.
- The documentation of the program, code or tool must include:
- Purpose of the program and individual top-level functions
- Instructions how to run the program
- Expected input (variables, region mappings) and standard output
- Explanation of any settings and optional parameters

Application programming interface
`````````````````````````````````

**Option 1**:

The module is called via a command-line interface (CLI)
and take the following arguments:

- :code:`input`: path to an IAMC-formatted file (:code:`xlsx` or :code:`csv`)
- :code:`output`: path where to write an output file
(usually derived timeseries data) in the same format
- Any relevant settings and optional parameters must also be specified
via the CLI

e.g. :code:`"python process.py --input path-to-input-file.xlsx --output path-to-output-file.xlsx"`

**Option 2** (applicable for packages/functions written in Python):

Importable Python functions that take and return :class:`pandas.DataFrame` (with columns
folllowing the IAMC format) or :class:`pyam.IamDataFrame` objects can be called as part
of the processing workflow. Any settings or optional parameters must be given as keyword
arguments to the top-level function, preferably with the option to set them via a
settings or configuration file.


Executing scenario processing locally
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

Expand Down Expand Up @@ -115,4 +175,4 @@ Read the `User Guide`_ of the **nomenclature** package for more information!

.. _`https://github.com/iiasa/<project>-workflow`: https://github.com/iiasa

.. _`User Guide`: https://nomenclature-iamc.readthedocs.io/en/stable/user_guide/local-usage.html
.. _`User Guide`: https://nomenclature-iamc.readthedocs.io/en/stable/user_guide/local-usage.html