We are members of the Bordeaux team in the iGEM competition. This repository contains the code of our application that simulates the growth of transformed bacteria on a solid surface. Detailed information on our project can be found at http://2016.igem.org/Team:Bordeaux/Model
The code is divided in two versions. The first one is based on the Donachie's cell division model and the second is based on another model of division (see our wiki for more information). Both directories contain a Modeling directory containing the Object Oriented code linked to the multi agent modeling.
To use our application you need- the g++ compiler
- the gtkm library
- the matplotlib library
Each version of the application contains a makefile to compile and you can run the executable interface.