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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    R 814 162

  2. scde scde Public

    R package for analyzing single-cell RNA-seq data

    R 177 66

  3. viv viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 326 57

  4. vizarr vizarr Public

    A minimal Zarr image viewer based on Viv.

    TypeScript 172 37

  5. CHIEF CHIEF Public

    Clinical Histopathology Imaging Evaluation Foundation Model

    Python 681 108

Repositories

Showing 10 of 384 repositories
  • pic-sure-bdc-release-control Public
    hms-dbmi/pic-sure-bdc-release-control’s past year of commit activity
    1 Apache-2.0 8 0 0 Updated Dec 5, 2025
  • uchimata-py Public

    Visualization of 3D genome models in notebooks

    hms-dbmi/uchimata-py’s past year of commit activity
    Python 1 MIT 0 2 0 Updated Dec 5, 2025
  • uchimata Public

    Library for visualizing three-dimensional genome models and associated genomics data

    hms-dbmi/uchimata’s past year of commit activity
    TypeScript 3 MIT 0 4 3 Updated Dec 5, 2025
  • biodata_catalyst_stigmatizing_variables Public
    hms-dbmi/biodata_catalyst_stigmatizing_variables’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 0 0 0 Updated Dec 5, 2025
  • avillachlab-jenkins-bdc-etl Public
    hms-dbmi/avillachlab-jenkins-bdc-etl’s past year of commit activity
    Shell 0 Apache-2.0 0 0 0 Updated Dec 4, 2025
  • ETLToolSuite-EntityGenerator Public

    This tool will generate Entity Files that can be used to load into Datasources.

    hms-dbmi/ETLToolSuite-EntityGenerator’s past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated Dec 4, 2025
  • i2b2v2-webclient Public
    hms-dbmi/i2b2v2-webclient’s past year of commit activity
    JavaScript 2 5 1 3 Updated Dec 4, 2025
  • PIC-SURE-Frontend Public

    A frontend for the PIC-SURE API

    hms-dbmi/PIC-SURE-Frontend’s past year of commit activity
    TypeScript 1 Apache-2.0 1 0 9 Updated Dec 4, 2025
  • ETL-MissionControl-dbgap-submodule Public

    ETL-MissionControl-dbgap-submodule

    hms-dbmi/ETL-MissionControl-dbgap-submodule’s past year of commit activity
    Python 0 Apache-2.0 0 0 2 Updated Dec 4, 2025
  • pic-sure-hpds-phenotype-load-example Public
    hms-dbmi/pic-sure-hpds-phenotype-load-example’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 1 0 1 Updated Dec 4, 2025
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