contianer_id -> image_id

hlpureboy · Nov 24, 2021 · 4ac5306 · 4ac5306
1 parent 7c81ad2
commit 4ac5306
Show file tree

Hide file tree

Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/scripts/config.py b/scripts/config.py
@@ -26,10 +26,10 @@ class fMRI_Prep_Job:
 
     # freesurfer_license
     freesurfer_license = "/share/user_data/public/fanq_ocd/license.txt"
-    # contianer id 
-    contianer_id = "d7235efbbd3c"
+    # image id 
+    image_id = "d7235efbbd3c"
     # fmriprep cmd 
-    cmd ="docker run -it --rm -v {bids_data_path}:/data -v {freesurfer_license}:/opt/freesurfer/license.txt -v {bids_output_path}:/out -v {fmri_work}:/work {contianer_id} /data /out --skip_bids_validation --ignore slicetiming fieldmaps  -w /work --omp-nthreads {thread} --fs-no-reconall --resource-monitor participant --participant-label {subject_ids}"
+    cmd ="docker run -it --rm -v {bids_data_path}:/data -v {freesurfer_license}:/opt/freesurfer/license.txt -v {bids_output_path}:/out -v {fmri_work}:/work {image_id} /data /out --skip_bids_validation --ignore slicetiming fieldmaps  -w /work --omp-nthreads {thread} --fs-no-reconall --resource-monitor participant --participant-label {subject_ids}"
 
 class Result:
     path = "./result/"

diff --git a/scripts/fmriprep_job.py b/scripts/fmriprep_job.py
@@ -21,7 +21,7 @@ def _fmriprep_cmd(args):
     """
     bids_data_path,freesurfer_license,bids_output_path,fmri_work,subject_ids,thread = args
     cmd = fMRI_Prep_Job.cmd
-    cmd = cmd.format(bids_data_path=bids_data_path,freesurfer_license=freesurfer_license,bids_output_path=bids_output_path,contianer_id=fMRI_Prep_Job.contianer_id,fmri_work=fmri_work,subject_ids=" ".join(subject_ids),thread=thread)
+    cmd = cmd.format(bids_data_path=bids_data_path,freesurfer_license=freesurfer_license,bids_output_path=bids_output_path,image_id=fMRI_Prep_Job.image_id,fmri_work=fmri_work,subject_ids=" ".join(subject_ids),thread=thread)
     logging.info(cmd)
     wrap_log = os.popen(cmd)
     for log in wrap_log:pass