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Sierra 3.1.0
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@philiptzou philiptzou released this 01 Mar 20:49
v3.1.0
10ff5df

New HIVDB algorithm 9.0 is released with this version! We added scores and comments for the newly FDA approved drug Cabotegravir (CAB).

Changes:

  1. GraphQL interface of AlignedGeneSequence now supports a String argument targetStrain passed to node adjustedAlignedAAs and adjustedAlignedNAs. This allows to adjust sequence alignment to references other than HIV1B (HXB2 numbering), such as HIV2A and HIV2B.
  2. GraphQL interface of SequenceReadsAnalysis now accepts a new Integer argument minCodonCount for specifying per-codon cutoff by number. The original argument minPrevalence is for specifying per-codon cutoff by percentage.
  3. hivfacts is updated to version 2021.3. Which includes latest lists of mutation types, DRMs, unusual mutations, signature APOBEC mutations, and APOBEC-context mutations.
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