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Interface Upgrade

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@nathanielknight nathanielknight released this 17 Apr 18:30
· 2 commits to master since this release
0.2.0-beta.2
0787910
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Learn about vigilant mode.

New features were introduced in this version:

  1. New alignment profile system allows custom references, genes, and scores.
  2. New built-in alignment profiles for HCV (genotypes 1a, 1b, 2, 3, 4, 5, and 6).
  3. New interface implements sub-commands:
    • align to align sequences using a built-in alignment profile
    • align-with to align sequences using a custom alignment profile
    • profile, which has subcommands for working with alignment profiles
      • profile check to verify that nucamino can load a custom alignment profile
      • list to list built-in profiles
      • list-genes to list the genes available in a built-in profile
      • print to print a YAML representation of a built-in profile
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