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chore: migrate to vite and typescript #4

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philiptzou
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Summary

  • migrate project to Vite build with React 19
  • introduce TypeScript configuration and strict type checking
  • rewrite Button component and app entry in TSX
  • configure Vitest with jsdom environment and add smoke test

Testing

  • npm test

https://chatgpt.com/codex/tasks/task_e_688e6ee0f5a88324abbb60e2a2dcafe8

philiptzou and others added 28 commits August 2, 2025 14:22
@philiptzou
chore: pin yarn package manager
177a109
@philiptzou
chore: pin core tooling to stable versions
131bac5
@philiptzou
test: add button component tests (#5)
f5479c1
@philiptzou
refactor: convert more components to tsx (#6)
7a36d85
@philiptzou
chore: enable jsx in js files (#7)
2c27fd3
@philiptzou
JSX to TSX; refactor components to functions (#8)
7955c0a
@philiptzou
refactor: migrate components to tsx (#9)
27f8f25
@philiptzou
chore: remove legacy sass files (#10)
8afa1ab
@philiptzou
chore: remove prop-types from ts components (#11)
ec476ec
@philiptzou
refactor: convert cumu-query hooks to ts (#12)
e5be353
@philiptzou
test: mock external sass dependencies (#13)
8da2eca
@philiptzou
refactor: restore dropdown styles and add docs (#14)
4c92742
@philiptzou
fix: restore third-party styles and silence sass warnings (#15)
eac94a7
@philiptzou
Fix
3bc5c61
@philiptzou
test: cover reference utilities (#16)
0436806
@philiptzou
fix: remove duplicate import (#17)
7d71f0d
@philiptzou
test: add coverage for mutation input components (#18)
28e77b9
@philiptzou
refactor: migrate utils to typescript (#20)
f698072
@philiptzou
refactor: drop leftover prop-types (#21)
ab966eb
@philiptzou
Fix duplicated imports in CMS utility (#22)
550b3df
@philiptzou
refactor: migrate analysis layouts to tsx (#23)
0df749a
@philiptzou
refactor: migrate simple table and collapsable to ts (#24)
17bc9e4
@philiptzou
refactor: migrate utils to typescript (#25)
744e080
@philiptzou
refactor: convert markdown components to ts (#26)
93aea47
@philiptzou
test: add tests for analyze forms (#27)
41551e2
@philiptzou
refactor: convert seq summary components to TS (#28)
3bc414b
@philiptzou
refactor: migrate ngs2codfreq to TypeScript (#30)
b15cdc6
@philiptzou
refactor: drop legacy js files (#32)
b18d9bb
philiptzou added 30 commits August 8, 2025 18:23
@philiptzou
chore: remove js sources after ts migration (#47)
6ee6b4c
@philiptzou
refactor: convert sars2 views to typescript (#48)
bb7a7fb
@philiptzou
test: add smoke tests for converted modules (#49)
3f7bab5
@philiptzou
test: add coverage for primer validation hooks (#50)
0e29761
@philiptzou
refactor: improve tabular report handling (#51)
c82ecec
@philiptzou
fix: remove duplicate React import (#52)
784345d
@philiptzou
Add AGENT.md
339219d
@philiptzou
Fix name
a53d961
@philiptzou
fix: address TypeScript issues in SARS2 modules (#54)
1634f21
@philiptzou
refactor: migrate canvas sequence viewer to TypeScript (#53)
828dfaa
@philiptzou
refactor: migrate views to typescript (#55)
1fb86a6
@philiptzou
fix: type utilities for canvas viewer (#56)
4939769 
* fix: type utilities for canvas viewer

* test: add useSeqViewerSize hook coverage
@philiptzou
fix: resolve type issues in mut-annot viewer (#57)
6fa6a53
@philiptzou
refactor: streamline react imports and typings (#58)
845461b
@philiptzou
fix: address initial TypeScript build errors (#59)
07ef48c
@philiptzou
fix: resolve initial build errors in analyze forms (#60)
b7fd011 
* fix: resolve initial build errors in analyze forms

* fix: tighten types in HIV reports

* fix: address hbv and hiv build errors

* chore: add module declarations for svg-crowbar and youtube-url

* fix: refine markdown utilities and heading anchors

* chore: add type shims

* fix: extend ebv tabular reports typing

* fix: type EBV report views
@philiptzou
Fix a few errors
14f94df
@philiptzou
fix: resolve initial build errors in ngs2codfreq (#61)
d2466c5
@philiptzou
Fix reference errors
2cd6702
@philiptzou
Fix errors
bd4b03d
@philiptzou
Update AGENTS.md
841313d
@philiptzou
fix: resolve initial build errors (#63)
12da2c5 
* fix: resolve initial build errors

* fix: address additional build-time type errors
@philiptzou
fix: address initial build type errors (#64)
5ad6425 
* fix: address initial build type errors

* chore: add type shim for react-virtualized-select

* fix: refine dropdown and typing for seq reports
@philiptzou
fix: resolve initial build errors (#65)
d5f3605 
* fix: address initial TypeScript build errors

* fix: address initial ts compile errors
@philiptzou
fix: resolve initial build errors (#66)
760b042
@philiptzou
docs: document Markdown component extensions (#67)
a1a17dc 
* docs: document Markdown component extensions

* docs: note markdown coverage requirement

* test: add shim for react-markdown

* test: cover markdown macros and memo comparator

* fix: remove react-markdown shim

* test: ensure markdown 100% coverage

* test: cover markdown components fully
@philiptzou
test: use distinct table value in markdown macro test (#68)
b552b1a
@philiptzou
Fix markdown renderer
a79e3f0
@philiptzou
Fix styles
098be40
@philiptzou
test: extend simple table coverage (#69)
61700c6
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@philiptzou