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HIVFacts 2020.4
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@philiptzou philiptzou released this 11 May 18:59
2020.4
61ddad6

Sierra is refactored to separate all HIV-depended data and code to hivfacts. In this new version, we added following data:

  • HIV-1
    • Gene definitions, reference sequences
    • ASI algorithms for drug resistance interpretation: HIVDB/ANRS/REGA
    • Subtypes, subtyping reference sequences
    • List of DRMs/SDRMs/TSMs
    • Typed mutations
  • HIV-2
    • Amino acid and codon level prevalence data of positions per treatment/subtype
    • List of APOBEC mutations/APOBEC-context DRMs
    • Gene definitions, reference sequences
    • ASI algorithms for drug resistance interpretation: HIVDB
    • Subtypes, subtyping reference sequences
    • List of DRMs/SDRMs
    • Typed mutations

The java version of hivfacts is heavily modified to provide access API for the above newly added data.

We also updated following existing datasets according to our latest database results:

  • HIV-1 amino acid level prevalence data and unusual mutation status
  • HIV-1 codon level prevalence data
  • HIV-1 APOBEC mutations/APOBEC-context DRMs
Assets 2
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