Pre-release 20230111-100930

Pre-release date: 2023-01-11 10:09:30 PST

Usage of the .db files:

The .db files are SQLite3 databases. You can simply use this command to open them (if SQLite3 is installed):

sqlite3 covid-drdb-20230111-100930.db

Once the SQLite shell prompts, type .tables to list all tables.

You can also use any SQLite viewer to open the database, e.g.:

• https://inloop.github.io/sqlite-viewer/
• https://sqlitebrowser.org/

Built with hivdb/covid-drdb@beaea4e

Pre-release 20230102-200326

Pre-release date: 2023-01-02 20:03:26 PST

Usage of the .db files:

The .db files are SQLite3 databases. You can simply use this command to open them (if SQLite3 is installed):

sqlite3 covid-drdb-20230102-200326.db

Once the SQLite shell prompts, type .tables to list all tables.

You can also use any SQLite viewer to open the database, e.g.:

• https://inloop.github.io/sqlite-viewer/
• https://sqlitebrowser.org/

Built with hivdb/covid-drdb@beaea4e

COVID-DRDB 20221219

Release date 2022-12-19

Changes since previous release (20221214):

• Arora22f - 10.1016/S1473-3099(22)00733-2 #724 (#729) (8374367, by zachandfox)

Usage of the .db files:

The .db files are SQLite3 databases. You can simply use this command to open them (if SQLite3 is installed):

sqlite3 covid-drdb-20221219.db

Once the SQLite shell prompts, type .tables to list all tables.

You can also use any SQLite viewer to open the database, e.g.:

• https://inloop.github.io/sqlite-viewer/
• https://sqlitebrowser.org/

Built with hivdb/covid-drdb@beaea4e

Pre-release 20221219-105834

Pre-release date: 2022-12-19 10:58:34 PST

Usage of the .db files:

The .db files are SQLite3 databases. You can simply use this command to open them (if SQLite3 is installed):

sqlite3 covid-drdb-20221219-105834.db

Once the SQLite shell prompts, type .tables to list all tables.

You can also use any SQLite viewer to open the database, e.g.:

• https://inloop.github.io/sqlite-viewer/
• https://sqlitebrowser.org/

Built with hivdb/covid-drdb@beaea4e

COVID-DRDB 20221214

Release date 2022-12-14

Changes since previous release (20221122):

• remove vaccine.st_shot, resolve #716 (ae87daa, by Kaiming Tao)
• update #310 (ba87cae, by Kaiming Tao)
• exclude BTI samples, #653 (9113883, by Kaiming Tao)
• update #658 (4b0f221, by Kaiming Tao)
• exclude Collier22 data for now, update #660 (f863cf9, by Kaiming Tao)
• Zou22c - 10.1101/2022.11.17.516898 #721 (#723) (913090c, by zachandfox)
• add Planas22b - 10.1101/2022.11.17.516888, resolve #722 (9ab42ac, by Kaiming Tao)

Usage of the .db files:

The .db files are SQLite3 databases. You can simply use this command to open them (if SQLite3 is installed):

sqlite3 covid-drdb-20221214.db

Once the SQLite shell prompts, type .tables to list all tables.

You can also use any SQLite viewer to open the database, e.g.:

• https://inloop.github.io/sqlite-viewer/
• https://sqlitebrowser.org/

Built with hivdb/covid-drdb@beaea4e

Pre-release 20221214-103312

Pre-release date: 2022-12-14 10:33:12 PST

Usage of the .db files:

The .db files are SQLite3 databases. You can simply use this command to open them (if SQLite3 is installed):

sqlite3 covid-drdb-20221214-103312.db

Once the SQLite shell prompts, type .tables to list all tables.

You can also use any SQLite viewer to open the database, e.g.:

• https://inloop.github.io/sqlite-viewer/
• https://sqlitebrowser.org/

Built with hivdb/covid-drdb@beaea4e

Pre-release 20221212-163212

Pre-release date: 2022-12-12 16:32:12 PST

Usage of the .db files:

The .db files are SQLite3 databases. You can simply use this command to open them (if SQLite3 is installed):

sqlite3 covid-drdb-20221212-163212.db

Once the SQLite shell prompts, type .tables to list all tables.

You can also use any SQLite viewer to open the database, e.g.:

• https://inloop.github.io/sqlite-viewer/
• https://sqlitebrowser.org/

Built with hivdb/covid-drdb@beaea4e

COVID-DRDB 20221122

Release date 2022-11-22

Changes since previous release (20221116):

• fix Misasi22, the value and unit in paper is pM, correct and convert them all to ng/ml (bb66b6b, by Kaiming Tao)
• fix author name (0d2d28e, by Kaiming Tao)
• add Add Riddell22, 10.1093/cid/ciac409, resolve #211 (3bca7b2, by Kaiming Tao)
• add Muik22c - 10.1126/sciimmunol.ade9888 #719 (1300e92, by Kaiming Tao)
• Add pseudo baseline sequence for EPIC-HR trial (FDA21d) (417b639, by Philip Tzou)
• Update FDA21d to use data from https://www.fda.gov/media/155050/download (333b5bd, by Philip Tzou)
• Add Fahnøe22 (10.3390/v14020172), RDV susceptibility data (#714) (90cc115, by Philip Tzou)
• remove Muik21, it's updated to Muik22, resolve #718 (26f99f3, by Kaiming)
• add Park22b - 10.1126/science.abm8143, resolve #711 (fbdaf5a, by Kaiming)
• add Chen22e - 10.1016/j.celrep.2022.111528, resolve #686 (e25905c, by Kaiming)
• add Zhu22b - 10.1016/j.virs.2022.10.006, resolve #685. Simplify BA.1 Spike:Q493K (bf83eaf, by Kaiming)
• update subject_mixed table for Collier22 (0cdefb4, by Kaiming)
• add Collier22 - 10.1101/2022.10.24.513619 #660 (69db05f, by Kaiming)
• add Madhi22 - 10.1016/S1473-3099(22)00596-5, resolve #659 (af9ee7f, by Kaiming)
• add Wang22k - 10.1101/2022.10.22.513349 #658 (bd87eae, by Kaiming)
• update variants (6061f1c, by Kaiming)
• remove Choi20_D152 (738a032, by Kaiming)
• update Nabel21 isolates (57aa504, by Kaiming)
• add Planas22 - 10.1016/j.medj.2022.09.010 #645 (67e4592, by Kaiming)
• Add Torii22 (10.1101/2022.02.22.481436), RDV susceptibility & in vitro data (1976d76, by Philip Tzou)
• fix #208, #2 and #5 treated with Remdevisir, details unknown. All patients were hospitalized. (43d439b, by Kaiming Tao)
• Add Laubscher21, 10.3390/microorganisms9102145, resolve #208 (00d2fec, by Kaiming Tao)

Usage of the .db files:

The .db files are SQLite3 databases. You can simply use this command to open them (if SQLite3 is installed):

sqlite3 covid-drdb-20221122.db

Once the SQLite shell prompts, type .tables to list all tables.

You can also use any SQLite viewer to open the database, e.g.:

• https://inloop.github.io/sqlite-viewer/
• https://sqlitebrowser.org/

Built with hivdb/covid-drdb@1e9aaed

Pre-release 20221122-122350

Pre-release date: 2022-11-22 12:23:50 PST

Usage of the .db files:

The .db files are SQLite3 databases. You can simply use this command to open them (if SQLite3 is installed):

sqlite3 covid-drdb-20221122-122350.db

Once the SQLite shell prompts, type .tables to list all tables.

You can also use any SQLite viewer to open the database, e.g.:

• https://inloop.github.io/sqlite-viewer/
• https://sqlitebrowser.org/

Built with hivdb/covid-drdb@1e9aaed

Pre-release 20221122-104551

Pre-release date: 2022-11-22 10:45:51 PST

Usage of the .db files:

The .db files are SQLite3 databases. You can simply use this command to open them (if SQLite3 is installed):

sqlite3 covid-drdb-20221122-104551.db

Once the SQLite shell prompts, type .tables to list all tables.

You can also use any SQLite viewer to open the database, e.g.:

• https://inloop.github.io/sqlite-viewer/
• https://sqlitebrowser.org/

Built with hivdb/covid-drdb@1e9aaed