COVID-DRDB 20210901
Release date 2021-09-01
Changes since previous release (20210811):
- update antibody_targets (b835b48, by Kaiming)
- Change B.1.621 to Mu and clean up variants/isolates (31137e0, by Philip Tzou)
- Merge branch 'master' of github.com:hivdb/covid-drdb-payload into master (4980a2b, by Kaiming)
- fix mAb epitopes and classes (413a40b, by Kaiming)
- Update suggest-new-study.md (400113a, by Philip Tzou)
- add McCallum21c,10.1101/2021.08.11.455956 (e2cee4a, by Kaiming)
- update C548, C549 class (8f67e50, by Kaiming)
- fix #23, individual mutation don't have var_name (f67124e, by Kaiming)
- add Wilhelm21,10.1101/2021.08.09.21261704 (ced8e19, by Kaiming)
- Update suggest-new-study.md (695693e, by Philip Tzou)
- Update suggest-new-study.md (a277642, by Philip Tzou)
- Add template for suggesting new study (93adb49, by Philip Tzou)
- Delete interface-feature-request.md (ac14e49, by Philip Tzou)
- Delete database-feature-request.md (9952c1d, by Philip Tzou)
- Add two more issue templates (9db8ff5, by Philip Tzou)
- Update description of data error report (c40a37a, by Philip Tzou)
- Add an issue template for reporting data error (8ec7359, by Philip Tzou)
- rename Annavajhala21 to Annavajhala21b (3f7e970, by Kaiming)
- Fix Issue #20 (4c05645, by Kaiming)
- add Du21,10.1038/s41467-021-25331-x (3e39ed2, by Kaiming)
- add Annavajhala21,10.1038/s41586-021-03908-2 (467ee0a, by Kaiming)
- fix dupont subject history (47de691, by Kaiming)
- exclude error data from zhang21c, update BRII-198 and Cilgavimab target (6139789, by Kaiming)
- add institute and origin (1dba7ed, by Kaiming)
- fix issues of cp (cfe9da2, by Kaiming)
- exclude XAV-19 (f73475c, by Kaiming Tao)
- fix vaccine_name missing issue (d5db7f9, by Kaiming Tao)
- add Tea21,10.1371/journal.pmed.1003656 (868add6, by Kaiming Tao)
- update age of Hammerschmidt21 subjects (a656c06, by Kaiming Tao)
- add Hammerschmidt21,10.1038/s41423-021-00755-z (c7957d6, by Kaiming Tao)
- add Ledesma21,10.1101/2021.08.22.21262186 (162d138, by Kaiming Tao)
- add Barros-Martins21,10.1038/s41591-021-01449-9 (a018025, by Kaiming Tao)
- add Behrens21,10.1016/S0140-6736(21)01891-2 (6acddde, by Kaiming Tao)
- fix England/MIG457/2020 (c010996, by Kaiming)
- update Acevedo DOI (57a58eb, by Kaiming)
- update acevedo21, add BNT data (bfad48c, by Kaiming)
- add Spencer21,10.1101/2021.06.08.447308 (baffe6f, by Kaiming)
- add Corbett21,10.1038/s41590-021-01021-0 (b717f05, by Kaiming)
- rename pCMV to pLentivirus (8457079, by Kaiming Tao)
- add Yadav21d,10.1101/2021.07.30.454511 (1282e66, by Kaiming Tao)
- add Yu21b,10.1038/s41586-021-03732-8 (8ca4a18, by Kaiming Tao)
- add Trombetta21,10.3390/v13071347 (bb526c6, by Kaiming Tao)
- add Wilson21,10.21203/rs.3.rs-678247/v1 (a3b519a, by Kaiming Tao)
- add Carreno21,10.1101/2021.07.21.21260961 (86fe3ee, by Kaiming)
- add Reynolds21,10.1126/science.abh1282 (068e795, by Kaiming)
- update pegu21 (84c1acb, by Kaiming)
- add Gushchin21 (e844ab7, by Kaiming)
- fix pegu21, EHC-083E, section of live virus (328064e, by Kaiming Tao)
- reformat tada21e-pot.csv and wu21c-plasma.csv (91e0be4, by Kaiming Tao)
- Merge remote-tracking branch 'shrutipai/master' (2296d39, by Kaiming Tao)
- update tada21e (582d835, by Kaiming Tao)
- update antibody with target (a964f9c, by Kaiming Tao)
- update antibody epitopes (f0bd649, by Kaiming Tao)
- Wu21c (c826d66, by Shruti Pai)
- West21 update (0b51f2c, by Shruti Pai)
- merge conflicts (253e3bf, by Shruti Pai)
- merge conflict (38a2e96, by Shruti Pai)
- Zhao21 (97b6567, by Shruti Pai)
- added Vacharathit21 birth years (a00dd44, by Shruti Pai)
- fixed riou21-pot (8354a85, by Shruti Pai)
- added Sahin21 Fig1b (56adc95, by Shruti Pai)
- Sahin21 (e88dc97, by Shruti Pai)
- Riou21 (d763b8a, by Shruti Pai)
- added infection events for pannus21 (5e1ab58, by Shruti Pai)
- Pannus21 (3046968, by Shruti Pai)
- conflicts in diez21 (17cd42a, by Shruti Pai)
- Diez21 (01f28be, by Shruti Pai)
- changed isolate name to S: format in Riou21, fixed conflicts in Abe21 (be7b440, by Shruti Pai)
- Abe21 (bbd0bf7, by Shruti Pai)
- Vacharathit21 (123dfa9, by Shruti Pai)
- fixed riou21-pot (b791bec, by Shruti Pai)
- added Sahin21 Fig1b (7aecb74, by Shruti Pai)
- Sahin21 (04ec3c1, by Shruti Pai)
- Riou21 (1aac635, by Shruti Pai)
- added infection events for pannus21 (055ba1f, by Shruti Pai)
- Pannus21 (041c5b0, by Shruti Pai)
- conflicts in diez21 (2eed0fb, by Shruti Pai)
- Diez21 (ed89f48, by Shruti Pai)
- changed isolate name to S: format in Riou21, fixed conflicts in Abe21 (29233f4, by Shruti Pai)
- Abe21 (f1814fa, by Shruti Pai)
- update dms data (f3caffd, by Kaiming)
- added Vacharathit21 birth years (39b6646, by Shruti Pai)
- conflict in articles (2d6dd9c, by Shruti Pai)
- Vacharathit21 (1bc3db8, by Shruti Pai)
- fixed riou21-pot (bb98653, by Shruti Pai)
- added Sahin21 Fig1b (59d23b8, by Shruti Pai)
- Sahin21 (44d1284, by Shruti Pai)
- Riou21 (cc10723, by Shruti Pai)
- added infection events for pannus21 (550a87a, by Shruti Pai)
- Pannus21 (1c13f30, by Shruti Pai)
- conflicts in diez21 (4edc9c6, by Shruti Pai)
- Diez21 (0e9ed06, by Shruti Pai)
- changed isolate name to S: format in Riou21, fixed conflicts in Abe21 (4a89611, by Shruti Pai)
- Abe21 (9149d05, by Shruti Pai)
- fixed riou21-pot (e79bba7, by Shruti Pai)
- added Sahin21 Fig1b (c7b3c6c, by Shruti Pai)
- Sahin21 (e55db3c, by Shruti Pai)
- Riou21 (cee6769, by Shruti Pai)
- added infection events for pannus21 (79d6118, by Shruti Pai)
- Pannus21 (8838d3e, by Shruti Pai)
- conflict in articles (60c7b22, by Shruti Pai)
- conflicts in diez21 (4756cac, by Shruti Pai)
- Diez21 (fc91037, by Shruti Pai)
- changed isolate name to S: format in Riou21, fixed conflicts in Abe21 (b52564a, by Shruti Pai)
- Merge remote-tracking branch 'shrutipai/master' into master (8d1da55, by Kaiming)
- Abe21 (cc51a0e, by Shruti Pai)
- fixed typo in articles (bd35292, by Shruti Pai)
- Merge branch 'master' of github.com:shrutipai/covid-drdb-payload into master (0c1b8ff, by Shruti Pai)
- added Sahin21 Fig1b (0a2e755, by Shruti Pai)
- edited num_subjects (daa90fe, by Shruti Pai)
- Sahin21 (f624ba3, by Shruti Pai)
- Riou21 (8ca2a2f, by Shruti Pai)
- added infection events for pannus21 (c65496d, by Shruti Pai)
- fixed article notes (dd5e441, by Shruti Pai)
- Pannus21 (a2c1953, by Shruti Pai)
- fixed date in Diez21 (a45dd93, by Shruti Pai)
- Diez21 (86c57ab, by Shruti Pai)
- added birth_year and num_subjects to subjects.csv (b155988, by Shruti Pai)
- Abe21 (0682e79, by Shruti Pai)
- added Sahin21 Fig1b (13a9f6d, by Shruti Pai)
- fix var_name for B.1.617.2_1731019 (2ceddf8, by Kaiming)
- edited num_subjects (91dbd91, by Shruti Pai)
- Sahin21 (746f147, by Shruti Pai)
- Riou21 (84c1b51, by Shruti Pai)
- added infection events for pannus21 (ee116dd, by Shruti Pai)
- fixed article notes (e0fc57a, by Shruti Pai)
- Pannus21 (70026ec, by Shruti Pai)
- fixed date in Diez21 (3dffff4, by Shruti Pai)
- Diez21 (9963f50, by Shruti Pai)
- added birth_year and num_subjects to subjects.csv (052fba9, by Shruti Pai)
- Abe21 (88f762a, by Shruti Pai)
- Merge remote-tracking branch 'shrutipai/master' into master (e0bcf40, by Kaiming)
- changed num_subjects for liu21h (8b30a5c, by Shruti Pai)
- Add LICENSE file (cc-by-sa 4.0) (f3c8a79, by Philip Tzou)
- merge conflicts (416ad77, by Shruti Pai)
- fixed conflict in potency (2f4a659, by Shruti Pai)
- fixed date in liu21-pot (358afca, by Shruti Pai)
- fix subjects (208162f, by Shruti Pai)
- merge conflicts (4b97430, by Shruti Pai)
- liu21h-pot, subjects (b58346e, by Shruti Pai)
- liu21h-pot, subjects (7f947ce, by Shruti Pai)
- merge conflict in subjects (b7c6801, by Shruti Pai)
- rename birthday to birth_day, add antibody mature month (965b3ae, by Kaiming)
- Merge branch 'master' of https://github.com/shrutipai/covid-drdb-payload into master (cd6044b, by Shruti Pai)
- Muecksch21b, Liu21h (fef3d73, by Shruti Pai)
- merge conflict in subjects (537f380, by Shruti Pai)
- add birthday for subjects (30c4f60, by Kaiming)
- fix Arora21 DOI (8b9411f, by Kaiming)
- change num_subjects for liu21h (73ffcc8, by Shruti Pai)
- removed extra lines from articles (1aff89a, by Shruti Pai)
- merge conflict (2e3a5b6, by Shruti Pai)
- fixed merge conflicts (6bd2715, by Shruti Pai)
- Muecksch21b, Liu21h (67350e6, by Shruti Pai)
Usage of the .db files:
The .db files are SQLite3 databases. You can simply use this command to open them (if SQLite3 is installed):
sqlite3 covid-drdb-20210901.dbOnce the SQLite shell prompts, type .tables to list all tables.
You can also use any SQLite viewer to open the database, e.g.: