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Preferences Loading, Divide By Background, Smoothing, Hysteresis
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@hansenjn hansenjn released this 20 Sep 19:43
· 13 commits to master since this release
v0.1.0
d36e4fc

New Methods implemented:

  • Loading of preferences from CiliaQ Preparator output files (CQP<>.txt files)
  • Divide By Background function: Divides the image by a Gaussian blurred copy of the image (radius defines the sigma of the Gaussian Blur applied) and thereby, creates a 32-bit image that is next used for thresholding and segmentation
  • Smoothing function: A Gaussian blur is applied to the image, user defines the radius (= sigma)
  • Hysteresis threshold method: A hysteresis threshold can be used for segmentation - uses a function from the 3D ImageJ Suite (https://imagejdocu.tudor.lu/plugin/stacks/3d_ij_suite/start#download)
  • Custom threshold method: A custom threshold can be entered that is applied during segmentation.
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