BugfixNoPNGSavingForTimelapse

Save 3D images as Tiff except in the non-timelapse mode, so that the
generated 3D movies in the time-lapse mode are stored in a format, where
they can be converted to videos.

pom.xml

@@ -11,7 +11,7 @@
 
  	<artifactId>CiliaQ_</artifactId>
  	<groupId>JNH</groupId>
-    <version>0.0.6-SNAPSHOT</version>
+    <version>0.0.7-SNAPSHOT</version>
 
 <!-- Plugin Information -->
  	<url>https://github.com/hansenjn/</url>

src/main/java/ciliaQ_jnh/CiliaQMain.java

@@ -1,10 +1,10 @@
 package ciliaQ_jnh;
 /** ===============================================================================
- * CiliaQ, a plugin for imagej - Version 0.0.6
+ * CiliaQ, a plugin for imagej - Version 0.0.7
  * 
  * Copyright (C) 2017-2020 Jan Niklas Hansen
  * First version: June 30, 2017  
- * This Version: February 24, 2020
+ * This Version: February 26, 2020
  * 
  * Parts of the code were inherited from MotiQ
  * (https://github.com/hansenjn/MotiQ).
@@ -46,7 +46,7 @@
 public class CiliaQMain implements PlugIn, Measurements {
 	//Name variables
 	static final String PLUGINNAME = "CiliaQ";
-	static final String PLUGINVERSION = "0.0.6";
+	static final String PLUGINVERSION = "0.0.7";
 
 	//Fix fonts
 	static final Font SuperHeadingFont = new Font("Sansserif", Font.BOLD, 16);
@@ -3159,7 +3159,7 @@ private void saveSkeletonOverviewImagesTimelapse(String savePath, ImagePlus imp,
 		progress.updateBarText("Saving timelapse skeleton overview 3D image...");		
 		imp3D = IJ.createImage("3D", width, height, impOut.getNFrames(), 24);
 		imp3D.setStack(stackOut);
-		IJ.saveAs(imp3D, "PNG", savePath + "_3D.png"); 
+		IJ.saveAsTiff(imp3D, savePath + "_3D.tif"); 
 
 		imp3D.changes = false;
 		imp3D.close();
@@ -3431,7 +3431,7 @@ private void saveImageAs3D(String savePath, ImagePlus imp, Visualizer3D v3D, boo
 
 		imp3D = IJ.createImage("3D", width, height, impOut.getNFrames(), 24);
 		imp3D.setStack(stackOut); 
-		IJ.saveAs(imp3D, "PNG", savePath + "_3D.png");
+		IJ.saveAsTiff(imp3D, savePath + "_3D.tif");
 
 		imp3D.changes = false;
 		imp3D.close();

src/main/resources/plugins.config

@@ -24,8 +24,8 @@
 # A plugin to analyze cilia in confocal 3D and 4D images
 
 # Author: Jan Niklas Hansen <[email protected]>
-# Version: 0.0.6
+# Version: 0.0.7
 # Date: 2017/06/30
 # Requires: ImageJ
 
-Plugins>JNH, "CiliaQ v0.0.6", ciliaQ_jnh.CiliaQMain
+Plugins>JNH, "CiliaQ v0.0.7", ciliaQ_jnh.CiliaQMain