Skip to content

Commit

Permalink
Add files via upload
Browse files Browse the repository at this point in the history
updating "ReferenceSamples" path for all files
  • Loading branch information
chunlinxiao authored Feb 13, 2020
1 parent 83838c9 commit 19cddcb
Show file tree
Hide file tree
Showing 14 changed files with 921 additions and 921 deletions.
Original file line number Diff line number Diff line change
@@ -1,2 +1,2 @@
BAM BAM_MD5 BAI BAI_MD5
ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/10XGenomics/NA12878_phased_possorted_bam.bam e3eae5390f0ae76de49601b142039e33 ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/10XGenomics/NA12878_phased_possorted_bam.bam.bai 535cae547b46b74d56eccc2ab4fcfe5e
ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/10XGenomics/NA12878_phased_possorted_bam.bam e3eae5390f0ae76de49601b142039e33 ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/10XGenomics/NA12878_phased_possorted_bam.bam.bai 535cae547b46b74d56eccc2ab4fcfe5e
Original file line number Diff line number Diff line change
@@ -1,2 +1,2 @@
BAM BAM_MD5 BAI BAI_MD5
ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/10XGenomics/10XGenomics_sizeselected/NA12878_phased_possorted.bam c429c0b620bbdc0fa847b743eda8910e ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/10XGenomics/10XGenomics_sizeselected/NA12878_phased_possorted.bam.bai 287bf43bb0fdc1b4cd6e10365f21d201
ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/10XGenomics/10XGenomics_sizeselected/NA12878_phased_possorted.bam c429c0b620bbdc0fa847b743eda8910e ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/10XGenomics/10XGenomics_sizeselected/NA12878_phased_possorted.bam.bai 287bf43bb0fdc1b4cd6e10365f21d201
Original file line number Diff line number Diff line change
@@ -1,3 +1,3 @@
BAM BAM_MD5 BAI BAI_MD5
ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/10Xgenomics_ChromiumGenome_LongRanger2.0_06202016/NA12878_GRCh38.bam afae011e73530d743fd5d295f7cb6da6 ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/10Xgenomics_ChromiumGenome_LongRanger2.0_06202016/NA12878_GRCh38.bam.bai cd26e6282e9e307ff6d756f1e7e4d571
ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/10Xgenomics_ChromiumGenome_LongRanger2.0_06202016/NA12878_GRCh37.bam 30cc7400a6b8cdf4128ab4550fc279f0 ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/10Xgenomics_ChromiumGenome_LongRanger2.0_06202016/NA12878_GRCh37.bam.bai 0f5735fcb58bdd84861394cdf2876095
ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/10Xgenomics_ChromiumGenome_LongRanger2.0_06202016/NA12878_GRCh38.bam afae011e73530d743fd5d295f7cb6da6 ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/10Xgenomics_ChromiumGenome_LongRanger2.0_06202016/NA12878_GRCh38.bam.bai cd26e6282e9e307ff6d756f1e7e4d571
ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/10Xgenomics_ChromiumGenome_LongRanger2.0_06202016/NA12878_GRCh37.bam 30cc7400a6b8cdf4128ab4550fc279f0 ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/10Xgenomics_ChromiumGenome_LongRanger2.0_06202016/NA12878_GRCh37.bam.bai 0f5735fcb58bdd84861394cdf2876095
Original file line number Diff line number Diff line change
@@ -1,3 +1,3 @@
BAM BAM_MD5 BAI BAI_MD5
ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/10Xgenomics_ChromiumGenome_LongRanger2.1_09302016/NA12878_GRCh38/NA12878_GRCh38_phased_possorted_bam.bam 9ddd9558bf849712e95d6139af228069 ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/10Xgenomics_ChromiumGenome_LongRanger2.1_09302016/NA12878_GRCh38/NA12878_GRCh38_phased_possorted_bam.bam.bai 8092bf7717f3f8f1bcb0fa1d6278fdc1
ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/10Xgenomics_ChromiumGenome_LongRanger2.1_09302016/NA12878_hg19/NA12878_hg19_phased_possorted_bam.bam 55a12579b1501b5dc960191f5363e982 ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/10Xgenomics_ChromiumGenome_LongRanger2.1_09302016/NA12878_hg19/NA12878_hg19_phased_possorted_bam.bam.bai 738d539823f96f39a9046fe4b72b0735
ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/10Xgenomics_ChromiumGenome_LongRanger2.1_09302016/NA12878_GRCh38/NA12878_GRCh38_phased_possorted_bam.bam 9ddd9558bf849712e95d6139af228069 ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/10Xgenomics_ChromiumGenome_LongRanger2.1_09302016/NA12878_GRCh38/NA12878_GRCh38_phased_possorted_bam.bam.bai 8092bf7717f3f8f1bcb0fa1d6278fdc1
ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/10Xgenomics_ChromiumGenome_LongRanger2.1_09302016/NA12878_hg19/NA12878_hg19_phased_possorted_bam.bam 55a12579b1501b5dc960191f5363e982 ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/10Xgenomics_ChromiumGenome_LongRanger2.1_09302016/NA12878_hg19/NA12878_hg19_phased_possorted_bam.bam.bai 738d539823f96f39a9046fe4b72b0735

Large diffs are not rendered by default.

Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
BAM BAM_MD5 BAI BAI_MD5
ftp://ftp-trace.ncbi.nih.gov/giab/ftp/data/NA12878/Garvan_NA12878_HG001_HiSeq_Exome/project.NIST_NIST7035_H7AP8ADXX_TAAGGCGA_1_NA12878.bwa.markDuplicates.bam edb7bba8479cf224bf3015fdfda44f39 ftp://ftp-trace.ncbi.nih.gov/giab/ftp/data/NA12878/Garvan_NA12878_HG001_HiSeq_Exome/project.NIST_NIST7035_H7AP8ADXX_TAAGGCGA_1_NA12878.bwa.markDuplicates.bai eaaad4ad3400ab03cb54fa1f898134de
ftp://ftp-trace.ncbi.nih.gov/giab/ftp/data/NA12878/Garvan_NA12878_HG001_HiSeq_Exome/project.NIST_NIST7035_H7AP8ADXX_TAAGGCGA_2_NA12878.bwa.markDuplicates.bam 90d7a35bd59971c44f528427a0b2da45 ftp://ftp-trace.ncbi.nih.gov/giab/ftp/data/NA12878/Garvan_NA12878_HG001_HiSeq_Exome/project.NIST_NIST7035_H7AP8ADXX_TAAGGCGA_2_NA12878.bwa.markDuplicates.bai 3937b9d067979cfa74f1f8dd717e52b5
ftp://ftp-trace.ncbi.nih.gov/giab/ftp/data/NA12878/Garvan_NA12878_HG001_HiSeq_Exome/project.NIST_NIST7086_H7AP8ADXX_CGTACTAG_1_NA12878.bwa.markDuplicates.bam 1246c31ecfe53e9f55bb4890d16ebb9a ftp://ftp-trace.ncbi.nih.gov/giab/ftp/data/NA12878/Garvan_NA12878_HG001_HiSeq_Exome/project.NIST_NIST7086_H7AP8ADXX_CGTACTAG_1_NA12878.bwa.markDuplicates.bai 1c9437d4ada3a5c8278c46cc2654b354
ftp://ftp-trace.ncbi.nih.gov/giab/ftp/data/NA12878/Garvan_NA12878_HG001_HiSeq_Exome/project.NIST_NIST7086_H7AP8ADXX_CGTACTAG_2_NA12878.bwa.markDuplicates.bam 08f63aba86cad1cde5ace41b602cb347 ftp://ftp-trace.ncbi.nih.gov/giab/ftp/data/NA12878/Garvan_NA12878_HG001_HiSeq_Exome/project.NIST_NIST7086_H7AP8ADXX_CGTACTAG_2_NA12878.bwa.markDuplicates.bai acb06b877735a4bed4b310d7f08eecfa
ftp://ftp-trace.ncbi.nih.gov/ReferenceSamples/giab/data/NA12878/Garvan_NA12878_HG001_HiSeq_Exome/project.NIST_NIST7035_H7AP8ADXX_TAAGGCGA_1_NA12878.bwa.markDuplicates.bam edb7bba8479cf224bf3015fdfda44f39 ftp://ftp-trace.ncbi.nih.gov/ReferenceSamples/giab/data/NA12878/Garvan_NA12878_HG001_HiSeq_Exome/project.NIST_NIST7035_H7AP8ADXX_TAAGGCGA_1_NA12878.bwa.markDuplicates.bai eaaad4ad3400ab03cb54fa1f898134de
ftp://ftp-trace.ncbi.nih.gov/ReferenceSamples/giab/data/NA12878/Garvan_NA12878_HG001_HiSeq_Exome/project.NIST_NIST7035_H7AP8ADXX_TAAGGCGA_2_NA12878.bwa.markDuplicates.bam 90d7a35bd59971c44f528427a0b2da45 ftp://ftp-trace.ncbi.nih.gov/ReferenceSamples/giab/data/NA12878/Garvan_NA12878_HG001_HiSeq_Exome/project.NIST_NIST7035_H7AP8ADXX_TAAGGCGA_2_NA12878.bwa.markDuplicates.bai 3937b9d067979cfa74f1f8dd717e52b5
ftp://ftp-trace.ncbi.nih.gov/ReferenceSamples/giab/data/NA12878/Garvan_NA12878_HG001_HiSeq_Exome/project.NIST_NIST7086_H7AP8ADXX_CGTACTAG_1_NA12878.bwa.markDuplicates.bam 1246c31ecfe53e9f55bb4890d16ebb9a ftp://ftp-trace.ncbi.nih.gov/ReferenceSamples/giab/data/NA12878/Garvan_NA12878_HG001_HiSeq_Exome/project.NIST_NIST7086_H7AP8ADXX_CGTACTAG_1_NA12878.bwa.markDuplicates.bai 1c9437d4ada3a5c8278c46cc2654b354
ftp://ftp-trace.ncbi.nih.gov/ReferenceSamples/giab/data/NA12878/Garvan_NA12878_HG001_HiSeq_Exome/project.NIST_NIST7086_H7AP8ADXX_CGTACTAG_2_NA12878.bwa.markDuplicates.bam 08f63aba86cad1cde5ace41b602cb347 ftp://ftp-trace.ncbi.nih.gov/ReferenceSamples/giab/data/NA12878/Garvan_NA12878_HG001_HiSeq_Exome/project.NIST_NIST7086_H7AP8ADXX_CGTACTAG_2_NA12878.bwa.markDuplicates.bai acb06b877735a4bed4b310d7f08eecfa
Original file line number Diff line number Diff line change
@@ -1,3 +1,3 @@
BAM BAM_MD5 BAI BAI_MD5
ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/NIST_NA12878_HG001_HiSeq_300x/RMNISTHS_30xdownsample.bam 0be437ac376966c73605f791eb50515e ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/NIST_NA12878_HG001_HiSeq_300x/RMNISTHS_30xdownsample.bam.bai 867383e9343eaef3983e335e923fd4fd
ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/NIST_NA12878_HG001_HiSeq_300x/RMNISTHS_30xdownsample.bam 0be437ac376966c73605f791eb50515e ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/NIST_NA12878_HG001_HiSeq_300x/RMNISTHS_30xdownsample.bam.bai 867383e9343eaef3983e335e923fd4fd
~
Original file line number Diff line number Diff line change
@@ -1,3 +1,3 @@
BAM BAM_MD5 BAI BAI_MD5
ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/NIST_NA12878_HG001_HiSeq_300x/NHGRI_Illumina300X_novoalign_bams/HG001.hs37d5.300x.bam 434b3b92a75c2a3fd4b886fdce0b4f77 ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/NIST_NA12878_HG001_HiSeq_300x/NHGRI_Illumina300X_novoalign_bams/HG001.hs37d5.300x.bam.bai 6b09a11e189f6c7517bf289aea72c93b
ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/NIST_NA12878_HG001_HiSeq_300x/NHGRI_Illumina300X_novoalign_bams/HG001.GRCh38_full_plus_hs38d1_analysis_set_minus_alts.300x.bam f48bf321c34f32b7c08feb17b9e5b220 ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/NIST_NA12878_HG001_HiSeq_300x/NHGRI_Illumina300X_novoalign_bams/HG001.GRCh38_full_plus_hs38d1_analysis_set_minus_alts.300x.bam.bai 00fd8ac75a92daf341e79008e7e9d900
ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/NIST_NA12878_HG001_HiSeq_300x/NHGRI_Illumina300X_novoalign_bams/HG001.hs37d5.300x.bam 434b3b92a75c2a3fd4b886fdce0b4f77 ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/NIST_NA12878_HG001_HiSeq_300x/NHGRI_Illumina300X_novoalign_bams/HG001.hs37d5.300x.bam.bai 6b09a11e189f6c7517bf289aea72c93b
ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/NIST_NA12878_HG001_HiSeq_300x/NHGRI_Illumina300X_novoalign_bams/HG001.GRCh38_full_plus_hs38d1_analysis_set_minus_alts.300x.bam f48bf321c34f32b7c08feb17b9e5b220 ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/NIST_NA12878_HG001_HiSeq_300x/NHGRI_Illumina300X_novoalign_bams/HG001.GRCh38_full_plus_hs38d1_analysis_set_minus_alts.300x.bam.bai 00fd8ac75a92daf341e79008e7e9d900
Original file line number Diff line number Diff line change
@@ -1,2 +1,2 @@
BAM BAM_MD5 BAI BAI_MD5
ftp://ftp-trace.ncbi.nih.gov/giab/ftp/data/NA12878/ion_exome/IonXpress_020_rawlib.b37.bam 03a4e135e997eb3f4d9c22474808676b ftp://ftp-trace.ncbi.nih.gov/giab/ftp/data/NA12878/ion_exome/IonXpress_020_rawlib.b37.bam.bai 76e455f04b84d49fc2ca6a8f5812f2a3
ftp://ftp-trace.ncbi.nih.gov/ReferenceSamples/giab/data/NA12878/ion_exome/IonXpress_020_rawlib.b37.bam 03a4e135e997eb3f4d9c22474808676b ftp://ftp-trace.ncbi.nih.gov/ReferenceSamples/giab/data/NA12878/ion_exome/IonXpress_020_rawlib.b37.bam.bai 76e455f04b84d49fc2ca6a8f5812f2a3
Original file line number Diff line number Diff line change
@@ -1,3 +1,3 @@
BAM BAM_MD5 BAI BAI_MD5
ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/NIST_NA12878_HG001_SOLID5500W/130920_HG001_merged.b37.bam 6f1053e1e3d6a18b8373b35278a6aa82 ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/NIST_NA12878_HG001_SOLID5500W/130920_HG001_merged.b37.bam.bai d76312ad7a1db5e227b277f487d37370
ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/NIST_NA12878_HG001_SOLID5500W/131114_HG001_merged.b37.bam b8e0a595a634f840f2a4c9070aa148a5 ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/NIST_NA12878_HG001_SOLID5500W/131114_HG001_merged.b37.bam.bai f660931ea048b328b28f60a44e7d9216
ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/NIST_NA12878_HG001_SOLID5500W/130920_HG001_merged.b37.bam 6f1053e1e3d6a18b8373b35278a6aa82 ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/NIST_NA12878_HG001_SOLID5500W/130920_HG001_merged.b37.bam.bai d76312ad7a1db5e227b277f487d37370
ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/NIST_NA12878_HG001_SOLID5500W/131114_HG001_merged.b37.bam b8e0a595a634f840f2a4c9070aa148a5 ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/NIST_NA12878_HG001_SOLID5500W/131114_HG001_merged.b37.bam.bai f660931ea048b328b28f60a44e7d9216
Original file line number Diff line number Diff line change
@@ -1,3 +1,3 @@
BAM BAM_MD5 BAI BAI_MD5
ftp://ftp-trace.ncbi.nih.gov/giab/ftp/data/NA12878/Nebraska_NA12878_HG001_TruSeq_Exome/NIST-hg001-7001-ready.bam 634bd46801101d435025c797f96f608a ftp://ftp-trace.ncbi.nih.gov/giab/ftp/data/NA12878/Nebraska_NA12878_HG001_TruSeq_Exome/NIST-hg001-7001-ready.bam.bai cb460830bad507ccc246785891ef54ff
ftp://ftp-trace.ncbi.nih.gov/giab/ftp/data/NA12878/Nebraska_NA12878_HG001_TruSeq_Exome/NIST-hg001-7001-b-ready.bam 941345dead2e3f58bb2aaa9055324f01 ftp://ftp-trace.ncbi.nih.gov/giab/ftp/data/NA12878/Nebraska_NA12878_HG001_TruSeq_Exome/NIST-hg001-7001-b-ready.bam.bai caf8c0b43f1b9643390f82e5f11e223c
ftp://ftp-trace.ncbi.nih.gov/ReferenceSamples/giab/data/NA12878/Nebraska_NA12878_HG001_TruSeq_Exome/NIST-hg001-7001-ready.bam 634bd46801101d435025c797f96f608a ftp://ftp-trace.ncbi.nih.gov/ReferenceSamples/giab/data/NA12878/Nebraska_NA12878_HG001_TruSeq_Exome/NIST-hg001-7001-ready.bam.bai cb460830bad507ccc246785891ef54ff
ftp://ftp-trace.ncbi.nih.gov/ReferenceSamples/giab/data/NA12878/Nebraska_NA12878_HG001_TruSeq_Exome/NIST-hg001-7001-b-ready.bam 941345dead2e3f58bb2aaa9055324f01 ftp://ftp-trace.ncbi.nih.gov/ReferenceSamples/giab/data/NA12878/Nebraska_NA12878_HG001_TruSeq_Exome/NIST-hg001-7001-b-ready.bam.bai caf8c0b43f1b9643390f82e5f11e223c
Loading

0 comments on commit 19cddcb

Please sign in to comment.