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@galelab

Gale Lab at the University of Minnesota

We study innate immunity to virus infection, intracellular immune processes, host response to viral infection, tuberculosis vaccine development and more.

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  1. scPathoQuant scPathoQuant Public

    single cell pathogen alignment and quantification tool

    Python 7 1

  2. Whitmore_scPathoQuant_testSets Whitmore_scPathoQuant_testSets Public

    Analysis for scPathoQuant software

    R 2

  3. Estes_GeoMx_DSP Estes_GeoMx_DSP Public

    1 1

  4. Rutishauser_post_intervention_HIV_control Rutishauser_post_intervention_HIV_control Public

    R 1

  5. GaleGEAnalysis GaleGEAnalysis Public

    R

  6. PublishedCode PublishedCode Public

    Links to code for recent publications

Repositories

Showing 10 of 22 repositories
  • Rutishauser_post_intervention_HIV_control Public
    galelab/Rutishauser_post_intervention_HIV_control’s past year of commit activity
    R 1 0 0 0 Updated Apr 4, 2025
  • Stokes_SC_Atlas_ZIKV_brain_infection Public

    Contains the single cell analysis for Caleb Stokes work with human fetal brain cells and iNPC cells infected with Zika

    galelab/Stokes_SC_Atlas_ZIKV_brain_infection’s past year of commit activity
    R 0 0 0 0 Updated Feb 5, 2025
  • Rosen_Sawatzki_SIV_B08_EliteContoller_DE Public

    Scripts and logs from "Acute-phase innate immune responses in SIVmac239-infected Mamu-B*08+ Indian rhesus macaques may contribute to the establishment of elite control." Rosen, 2024.

    galelab/Rosen_Sawatzki_SIV_B08_EliteContoller_DE’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Feb 5, 2025
  • Davis_nanostring_covid_age_span Public
    galelab/Davis_nanostring_covid_age_span’s past year of commit activity
    0 0 0 0 Updated Jan 29, 2025
  • Lu_zika_AF_vs_AS Public
    galelab/Lu_zika_AF_vs_AS’s past year of commit activity
    0 0 0 0 Updated Jan 29, 2025
  • Sung_RhCMV_TB_IL15_Attenuation Public

    Bulk RNA-seq analysis of 68-1 RhCMV/TB6Ag and its attenuated variant vaccine signatures of RM whole blood samples and overlapping with RhCMV/SIV IL-15 signature.

    galelab/Sung_RhCMV_TB_IL15_Attenuation’s past year of commit activity
    R 0 0 0 0 Updated Oct 16, 2024
  • scViz Public

    Package of single cell visualization methods

    galelab/scViz’s past year of commit activity
    R 0 0 0 0 Updated Aug 28, 2024
  • scPathoQuant Public

    single cell pathogen alignment and quantification tool

    galelab/scPathoQuant’s past year of commit activity
    Python 7 BSD-3-Clause 1 1 0 Updated Jul 30, 2024
  • Sacha_CyCMV-FLU_2024 Public

    Bulk RNA sequencing analysis for Cynomolgus macaques given CyCMV/flu vectors

    galelab/Sacha_CyCMV-FLU_2024’s past year of commit activity
    R 0 0 0 0 Updated May 24, 2024
  • OConnor_SIV-ZIKV_coinfection Public

    nCounter Analysis of SIV ZIKV coinfection of pigtail macaques

    galelab/OConnor_SIV-ZIKV_coinfection’s past year of commit activity
    R 0 0 0 0 Updated May 22, 2024
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