Skip to content

Update README.md #42

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
jj-umn wants to merge 1 commit into
base: master
Choose a base branch
from
Open

Update README.md #42

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
12 changes: 6 additions & 6 deletions README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@ Quantitative analysis on the function and taxonomy of microbiomes and their inte
- [Usage](#usage-)
- [Tests](#tests-)

## Setup [⤴](#table-of-contents)
## Setup (#table-of-contents)

### BioConda

Expand All @@ -28,10 +28,10 @@ conda config --add channels bioconda
conda config --add channels conda-forge
```

Then, run the following command to set up an environment named mqome, which will have metaQuantome (version 2.0.0) and all dependencies in it:
Then, run the following command to set up an environment named mqome, which will have metaQuantome (version 2.0.1) and all dependencies in it:

```
conda create -n mqome metaquantome=2.0.0
conda create -n mqome metaquantome=2.0.1
```

If the following prompt is seen at the command line, type `y`:
Expand Down Expand Up @@ -62,13 +62,13 @@ To install your local version of metaQuantome, run the following in the root dir
pip install .
```

## Usage [⤴](#table-of-contents)
## Usage (#table-of-contents)

In-depth tutorials can be found [here](https://galaxyproteomics.github.io/metaquantome_mcp_analysis/) for the following:
1. [metaQuantome command-line interface](https://galaxyproteomics.github.io/metaquantome_mcp_analysis/cli_tutorial/cli_tutorial.html)
2. [metaQuantome Galaxy tool](https://galaxyproteomics.github.io/metaquantome_mcp_analysis/galaxy_tutorial/galaxy_tutorial.html)

## Tests [⤴](#table-of-contents)
## Tests (#table-of-contents)


For testing, you will also need to set up a BioConda environment as specified [above](#bioconda-).
Expand All @@ -84,4 +84,4 @@ Once set up, run the following from the root directory:
```sh
python -m unittest discover tests
```
*Note: This step will take a few minutes to run*
*Note: This step will take a few minutes to run*