Issues

• INS merging silently drops correct merges when INFO field starts with END=

  fritzsedlazeck/SURVIVOR#240 · Filter by author aksenia opened on Jun 5, 2026

• Unisample VCF by keeping 'best calls per locus' from multisample VCF after merging?

  fritzsedlazeck/SURVIVOR#239 · Filter by author jamonterotena opened on Mar 18, 2026

• Inquiry regarding SURVIVOR merge compatibility with SyRI-generated VCFs

  fritzsedlazeck/SURVIVOR#238 · Filter by author W-xyue opened on Feb 6, 2026

• Variant/reference sequence mismatch

  fritzsedlazeck/SURVIVOR#237 · Filter by author zhiyongli1995 opened on Nov 20, 2025

• SUPP Type to Integer

  fritzsedlazeck/SURVIVOR#235 · Filter by author carolynzy opened on Nov 7, 2025

• BND SVs

  fritzsedlazeck/SURVIVOR#233 · Filter by author asmmahmoud opened on Aug 20, 2025
  2

• [Improvement] Merging segment files from copy number alteration pipelines

  fritzsedlazeck/SURVIVOR#231 · Filter by author GACGAMA opened on Jul 23, 2025

• duplicate column in simulated bed file

  fritzsedlazeck/SURVIVOR#230 · Filter by author thom-99 opened on Jul 21, 2025
  1

• error in parsing the header : 'Could not parse the "#CHROM.." line, either FORMAT is missing or spaces are present instead of tabs:'

  fritzsedlazeck/SURVIVOR#229 · Filter by author thom-99 opened on Jul 21, 2025

• Sorting problem with output vcf files

  fritzsedlazeck/SURVIVOR#227 · Filter by author zhujiahua700403 opened on Apr 6, 2025

• POS and REF Inconsistencies in SURVIVOR Merge

  fritzsedlazeck/SURVIVOR#226 · Filter by author leechiehyu opened on Dec 25, 2024

• The missing genotype (./.) can be interpreted as a (0/0) genotype

  fritzsedlazeck/SURVIVOR#224 · Filter by author KrithikaSubramanian opened on Nov 13, 2024

• simreads fastq format

  fritzsedlazeck/SURVIVOR#223 · Filter by author sagarc88 opened on Oct 25, 2024
  2

• get tumor.only.vcf

  fritzsedlazeck/SURVIVOR#222 · Filter by author DayTimeMouse opened on Oct 1, 2024

• How ca I merged same samples called by different tools without duplicating IDs?

  fritzsedlazeck/SURVIVOR#221 · Filter by author itsmestewart opened on Sep 17, 2024
  1

• SURVIVOR always skipping 1 vcf file

  fritzsedlazeck/SURVIVOR#220 · Filter by author Anees-caas opened on Sep 4, 2024

• Index the SURVIVOR VCF file

  fritzsedlazeck/SURVIVOR#218 · Filter by author ywzhang071394 opened on Aug 29, 2024

• mangled header

  fritzsedlazeck/SURVIVOR#217 · Filter by author tzvi909 opened on Aug 19, 2024
  1

• SURVIVOR merge is resulting in a lot of missing data, can I treat them as 0/0?

  fritzsedlazeck/SURVIVOR#216 · Filter by author qizhengyang2017 opened on Aug 12, 2024
  3

• Bug found: SV LEN value cutted

  fritzsedlazeck/SURVIVOR#213 · Filter by author leone93 opened on Mar 26, 2024

• How to merge these columns following it from SURVIVOR merge result, and gain the Paragraph software input file

  fritzsedlazeck/SURVIVOR#212 · Filter by author HuTaoJiaZiAckerman opened on Mar 15, 2024

• about the output file, which file does it come from?

  fritzsedlazeck/SURVIVOR#211 · Filter by author Davidseye opened on Mar 8, 2024

• Clarification on derivation of SV length and type

  fritzsedlazeck/SURVIVOR#210 · Filter by author olivia-gc opened on Mar 7, 2024

• I call it "Nested merge"

  fritzsedlazeck/SURVIVOR#209 · Filter by author HuTaoJiaZiAckerman opened on Mar 6, 2024

• simreads endless runtime

  fritzsedlazeck/SURVIVOR#208 · Filter by author bjhunt-git opened on Mar 6, 2024