This repository contains all the insights, useful tricks, interesting usages for Linux Shell commands, it will be especially useful for people working in Bioinformatics field. I will be the maintainer of this repository and I will update its content periodically.
https://towardsdatascience.com/linux-shell-commands-can-be-your-time-saver-eabee76914b
- wc, cp, mv command
- find commands
- Understanding Linux and Shell
- Shell data type
- git command
- batch processing and parallelization
- compress, decompress, archive
- Manipulate path of file
- Using Python to call Shell
- md5sum check
- text wranling
- file and folder size
- common conda commands
- Learn bam file
- LSF job scheduler
- awk usage
- grep usage
- display and kill process
- Downloading
- sed usage
- Array
- string
- If condition
- numerical calculation
- Run in background, process, kill
- How to install R packages?
- Multiple lines for if and foor loop
- For and Seq command for iterating numerical variables
- slurm job scheduler
- SSH key
- Permission
- docker, singularity
- stay tuned