feature: subworkflow for isolate genomes - #127
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franciscozorrilla wants to merge 3 commits into
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add shovill rule to Snakefile for dealing with isolate assembly data. will also need to make additions/changes to * metaGEM.sh: add flag/option to support new task * config.yaml: add params used in task * readme file: text and eventually figure
remove unnecessary code and move shovill rule up to a more appropriate place in the Snakefile
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🦠 Isolate genomes subworkflow 🔦
Adding support for isolate genome assembly in the next version of metaGEM 💎
🐍 Snakefile tasks
🔨 Additional modifications for full integration/support