This dockerfile finally builds correctly.

flatironinstitute · Feb 12, 2019 · 0c3b07d · 0c3b07d
1 parent b10d147
commit 0c3b07d
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -2,6 +2,8 @@ FROM continuumio/anaconda3
 
 RUN conda config --set always_yes yes
 RUN conda update --yes conda
-RUN mkdir src && cd src && git clone -b dev https://github.com/flatironinstitute/CaImAn.git && cd CaImAn && conda env create -n caiman -f environment.yml && source activate caiman && pip install .
-RUN source activate caiman && caimanmanager.py install
+RUN apt-get install -y gcc g++ libgl1
+RUN mkdir src && cd src && git clone -b dev https://github.com/flatironinstitute/CaImAn.git && cd CaImAn && conda env create -n caiman -f environment.yml && conda install --override-channels -c conda-forge -n caiman pip
+RUN /bin/bash -c "cd src/CaImAn && source activate caiman && /opt/conda/envs/caiman/bin/pip install ."
+RUN /bin/bash -c "source activate caiman && caimanmanager.py install"