GitHub - fjug/BobSeg

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Name	Name	Last commit message	Last commit date
Latest commit Florian Jug New notebooks and updating some old ones Feb 11, 2018 41d0fd9 · Feb 11, 2018 History 82 Commits
MiscNotebooks	MiscNotebooks	fixed dense flow example	Sep 28, 2016
data	data	added some testdata	Feb 11, 2018
snippets	snippets	init	Sep 22, 2016
.gitignore	.gitignore	added .DS_Store	May 22, 2017
Finding+Centers.ipynb	Finding+Centers.ipynb	New notebooks and updating some old ones	Feb 11, 2018
KymographMaker.ipynb	KymographMaker.ipynb	New notebooks and updating some old ones	Feb 11, 2018
KymographTests.ipynb	KymographTests.ipynb	put kymograph stuff in class and use it (spiders can be built)	Apr 26, 2017
SegmentAndMeasure.ipynb	SegmentAndMeasure.ipynb	small edits	Apr 21, 2017
SphereSampling.ipynb	SphereSampling.ipynb	fix for flow video export	Feb 27, 2017
TablerHack.ipynb	TablerHack.ipynb	New notebooks and updating some old ones	Feb 11, 2018
TimeLapseData2d-Copy1.ipynb	TimeLapseData2d-Copy1.ipynb	Mark's mods	Apr 28, 2017
TimeLapseData2d.ipynb	TimeLapseData2d.ipynb	New notebooks and updating some old ones	Feb 11, 2018
TimeLapseData2d_OLD.ipynb	TimeLapseData2d_OLD.ipynb	WIP - plot slipping rates	Apr 28, 2017
TimeLapseData3d-Copy1.ipynb	TimeLapseData3d-Copy1.ipynb	Mark's mods	Apr 28, 2017
TimeLapseData3d.ipynb	TimeLapseData3d.ipynb	nix2	Apr 28, 2017
VisualizeFlow-Divergence.ipynb	VisualizeFlow-Divergence.ipynb	Comments added in nms section	Sep 22, 2017
VisualizeFlow.ipynb	VisualizeFlow.ipynb	Showing flow and average flow on top of membrane image -- hope this h…	Sep 1, 2017
VisualizeFlow_mah.ipynb	VisualizeFlow_mah.ipynb	New notebooks and updating some old ones	Feb 11, 2018
bresenham.py	bresenham.py	init	Sep 22, 2016
data3d.py	data3d.py	ripped movie generation out of data3d	May 26, 2017
data4d.py	data4d.py	Bugfix	Sep 29, 2016
fiducials.py	fiducials.py	Fixed all bugs. Fiducial histories now organized by Fiducials2d!	May 26, 2017
kymographs.py	kymographs.py	wip	May 26, 2017
moviemaker2d.py	moviemaker2d.py	Fixed all bugs. Fiducial histories now organized by Fiducials2d!	May 26, 2017
myfunctions.py	myfunctions.py	Lots of failed attempts to segment whole worm + cell seg video	Sep 23, 2016
netsurface2d.py	netsurface2d.py	bugfix: used wrong k for connecting timepoints	Feb 11, 2018
netsurface2dt.py	netsurface2dt.py	mods and improvements (also for Amy's ring data)	Oct 4, 2016
netsurface3d.py	netsurface3d.py	added Data3d and 2d+t versions of NetSurf	Sep 27, 2016
sphere_sampling.pkl	sphere_sampling.pkl	Sphere sampling now also computes triangulation	Sep 25, 2016
sphere_sampling_1024.pkl	sphere_sampling_1024.pkl	some cleaning	Apr 21, 2017