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2018.10.26/Dockerfile

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+FROM rocker/rstudio:3.5.1 
+MAINTAINER "Victor Maus" [email protected]
+
+RUN apt-get update \
+  && apt-get install -y --no-install-recommends \
+    ## Dependencies from rocker/geospatial
+    lbzip2 \
+    libbz2-dev \
+    libfftw3-dev \
+    libgdal-dev \
+    libgeos-dev \
+    libgsl0-dev \
+    libgl1-mesa-dev \
+    libglu1-mesa-dev \
+    libhdf4-alt-dev \
+    libhdf5-dev \
+    libjq-dev \
+    liblwgeom-dev \
+    libproj-dev \
+    libprotobuf-dev \
+    libnetcdf-dev \
+    libsqlite3-dev \
+    libssl-dev \
+    libudunits2-dev \
+    netcdf-bin \
+    protobuf-compiler \
+    tk-dev \
+    unixodbc-dev \
+    ## Additional dependencies
+    libnlopt-dev \
+    libv8-3.14-dev \
+    libcairo2-dev \
+    libgit2-dev \
+    r-cran-openssl \
+    r-base-dev \
+    r-cran-rjava \
+    liblzma-dev \
+    openjdk-8-jre \
+    openjdk-8-jdk \
+    libpcre3-dev \
+  && R CMD javareconf \
+  && install2.r --error \
+    BiocManager \
+    ## from bioconductor
+  && R -e "BiocManager::install('rhdf5', ask = FALSE)" \ 
+  && install2.r --error \
+    ## R packages from rocker/geospatial
+    RColorBrewer \
+    RandomFields \
+    RNetCDF \
+    classInt \
+    deldir \
+    gstat \
+    hdf5r \
+    lidR \
+    mapdata \
+    maptools \
+    mapview \
+    ncdf4 \
+    proj4 \
+    raster \
+    rgdal \
+    rgeos \
+    rlas \
+    sf \
+    sp \
+    spacetime \
+    spatstat \
+    spdep \
+    geoR \
+    geosphere \
+    ## Additional R packages 
+    devtools \
+    roxygen2 \
+    RSelenium \
+    rlist \
+    ggthemes \
+    ggmosaic \
+    viridis \
+    XLConnect \
+    ckanr \
+    ggrepel \
+    ggmap \
+    kableExtra \
+    countrycode \
+    gsubfn \
+    rmapshaper \
+    readODS \
+    caret \
+    RWeka \
+    config \
+    dendextend \
+    ensurer \
+    dtw \
+    dtwclust \
+    dtwSat \
+    reticulate \
+    gbm \
+    keras \
+    kohonen \
+    imputeTS \
+    log4r \
+    openxlsx \
+    ranger \
+    signal \
+    wtss \
+    comtradr \
+    xlsx \
+    captioner \
+    stargazer 
+
+