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1. ViralUnity ViralUnity Public

   ViralUnity is an integrated pipeline designed for comprehensive data quality control, metagenomic analysis, and reference assembly of viral genomes. It streamlines the process of handling viral gen…

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2. RT-Metagenomics RT-Metagenomics Public

   This repo contains code and test data for RT-Meta, an app for real time metagenomic analysis with nanopore sequecing data.

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3. SC2_lineage_B.1.1.7_in_Brazil SC2_lineage_B.1.1.7_in_Brazil Public

   Data and code for a genomic epidemiology on the spread of SARS-CoV-2 lineage B.1.1.7 in Brazil. See: https://virological.org/t/emergence-and-spread-of-sars-cov-2-lineage-b-1-1-7-in-brazil/638

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4. dataset_collation_tool dataset_collation_tool Public

   This repository contains a simple script for assembling datasets used in viral genomic epidemiology. It utilizes the NCBI Datasets command-line interface tool to retrieve and sample relevant geneti…

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5. Genomic_Surveillance_in_Belo_Horizonte Genomic_Surveillance_in_Belo_Horizonte Public

   This repo contains data and results of our ongoing genomic epidemiology study in Belo Horizonte. Any doubts, please refer to myself (filiperomero@gmail.com) or Dr. Renato Santana de Aguiar (santana…

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6. Get_IDT_input Get_IDT_input Public

   This repo contains a simple python script to generate fasta files with a specific format required by IDT to perform primer desing with rhAmp technology.

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