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Mitchell R. Vollger
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expand ONT docs
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src/quick-start.md

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@@ -63,7 +63,7 @@ ft add-nucleosomes filtered.dorado.bam output.bam
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Here is an example summary of the commands to process ONT data assuming you have already completed 6mA and CpG calling with `dorado`:
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```bash
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`#converts to fastq for keeping all the BAM tags` \
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`#converts to fastq keeping all the BAM tags` \
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samtools fastq -@ 8 -T "*" ONT.dorado.with.6mA.bam \
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`#aligns the data inserting the tags back into the output BAM`
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| minimap2 -t 32 --secondary=no -I 8G --eqx --MD -Y -y -ax map-ont reference.fasta - \

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