Imporve all latent search and curate some antibody features

etowahadams · Dec 9, 2024 · a54abf5 · a54abf5
1 parent 716e95c
commit a54abf5
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Showing 7 changed files with 572 additions and 112 deletions.
diff --git a/viz/package.json b/viz/package.json
@@ -12,6 +12,7 @@
   "dependencies": {
     "@radix-ui/react-accordion": "^1.2.1",
     "@radix-ui/react-dialog": "^1.1.2",
+    "@radix-ui/react-dropdown-menu": "^2.1.2",
     "@radix-ui/react-icons": "^1.3.0",
     "@radix-ui/react-select": "^2.1.2",
     "@radix-ui/react-separator": "^1.1.0",

diff --git a/viz/pnpm-lock.yaml b/viz/pnpm-lock.yaml
diff --git a/viz/src/SAEConfigs.ts b/viz/src/SAEConfigs.ts
@@ -398,6 +398,66 @@ export const SAE_CONFIGS: Record<string, SAEConfig> = {
         desc: "Activates on the interior of the Pumilio RNA-binding domains",
         group: "structural",
       },
+      {
+        name: "one apart",
+        dim: 1124,
+        desc: "Activates on two residues that are one apart. For the top activating sequences, the activation tends to be in disordered regions of antibodies.",
+        group: "amino acid position",
+      },
+      {
+        name: "alanine",
+        dim: 155,
+        desc: "Activates on alanine residues",
+        group: "amino acid identity",
+      },
+      {
+        name: "glycine",
+        dim: 2872,
+        desc: "Activates on glycine residues",
+        group: "amino acid identity",
+      },
+      {
+        name: "leucine",
+        dim: 223,
+        desc: "Activates on leucine residues",
+        group: "amino acid identity",
+      },
+      {
+        name: "aspartic acid",
+        dim: 2908,
+        desc: "Activates on aspartic acid residues",
+        group: "amino acid identity",
+      },
+      {
+        name: "tyrosine",
+        dim: 65,
+        desc: "Activates on tyrosine residues",
+        group: "amino acid identity",
+      },
+      {
+        name: "isoleucine",
+        dim: 2190,
+        desc: "Activates on isoleucine residues",
+        group: "amino acid identity",
+      },
+      {
+        name: "valine",
+        dim: 445,
+        desc: "Activates on valine residues",
+        group: "amino acid identity",
+      },
+      {
+        name: "methionine",
+        dim: 1087,
+        desc: "Activates on methionine residues",
+        group: "amino acid identity",
+      },
+      {
+        name: "end",
+        dim: 2599,
+        desc: "Activates on the last few amino acids in a sequence, with increasing intensity as we get closer to the end",
+        group: "amino acid position",
+      },
     ],
   },
 };