Petri

A workflow generator for lab automation. Play with the demo instance at https://petri.escalante.bio!

This is a local-only export of our internal code. There is a private server-side orchestrator that this originally connected with and a few other pieces that are not included.

Stack

This is a Corgi + Three.js application. Deployments are handled by Sisyphus.

Running it locally

bazel build //petri:runner && \
    BAZEL_BINDIR='bazel-bin' sisyphus app run-config \
    --binary bazel-bin/petri/runner_/runner \
    --config petri/server.star \
    --environment dev

Running client-side tests

bazel test //petri/client/...

You can update snapshots by running bazel run //petri/client/execution:jest_update_snapshots.

Running the formatter

pnpx gts fix petri

Pushing the container

Set the binary_repository value in petri/BUILD.bazel to your repository's URL and then run

bazel run //petri:image_push