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Unexpected “X” characters in FASTA output from vcf2phylip

Status: Open.

#54 In edgardomortiz/vcf2phylip;

· hungweichen0327 opened on Aug 13, 2025

several outgroup

Status: Open.

#53 In edgardomortiz/vcf2phylip;

· akbarjon-rozimov opened on Jan 9, 2025

error about Line 123 and 419 in vcf2phylip.py

Status: Open.

#52 In edgardomortiz/vcf2phylip;

· Grace0114 opened on Nov 26, 2024

Default output type of vcf2phylip.py: too many ambiguous nucleotide sequences?

Status: Open.

#51 In edgardomortiz/vcf2phylip;

· LiuCanidk opened on Oct 20, 2024

issues convert vcf file to phylyp

Status: Open.

#50 In edgardomortiz/vcf2phylip;

· lophostoma opened on Jun 5, 2024

error: unexpected end-of-file.

Status: Open.

#47 In edgardomortiz/vcf2phylip;

· zhujack8 opened on Jan 4, 2024

Can't regonized by Treebest to buid NJ tree

Status: Open.

#43 In edgardomortiz/vcf2phylip;

· Sherry520 opened on Sep 6, 2023

error

Status: Open.

#41 In edgardomortiz/vcf2phylip;

· awaisrasheedqau opened on May 6, 2023

output path issue

Status: Open.

#40 In edgardomortiz/vcf2phylip;

· CHAOS324 opened on Dec 29, 2022

Deciding an outgroup to root the tree

Status: Open.

#39 In edgardomortiz/vcf2phylip;

· Ram-Nagar opened on Oct 21, 2022

output for phased data

enhancement

Status: Open.

#29 In edgardomortiz/vcf2phylip;

· erikenbody opened on Feb 24, 2021