Skip to content

Commit

Permalink
paper: fixes doi
Browse files Browse the repository at this point in the history
  • Loading branch information
biomadeira committed Dec 18, 2024
1 parent 7c1d43d commit 75f940a
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion paper/paper.bib
Original file line number Diff line number Diff line change
Expand Up @@ -44,7 +44,7 @@ @article{yu_ggtree_2017
number = {1},
pages = {28-36},
keywords = {annotation, bioconductor, evolution, phylogeny, r package, visualization},
doi = {https://doi.org/10.1111/2041-210X.12628},
doi = {10.1111/2041-210X.12628},
url = {https://besjournals.onlinelibrary.wiley.com/doi/abs/10.1111/2041-210X.12628},
eprint = {https://besjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/2041-210X.12628},
abstract = {Summary We present an r package, ggtree, which provides programmable visualization and annotation of phylogenetic trees. ggtree can read more tree file formats than other softwares, including newick, nexus, NHX, phylip and jplace formats, and support visualization of phylo, multiphylo, phylo4, phylo4d, obkdata and phyloseq tree objects defined in other r packages. It can also extract the tree/branch/node-specific and other data from the analysis outputs of beast, epa, hyphy, paml, phylodog, pplacer, r8s, raxml and revbayes software, and allows using these data to annotate the tree. The package allows colouring and annotation of a tree by numerical/categorical node attributes, manipulating a tree by rotating, collapsing and zooming out clades, highlighting user selected clades or operational taxonomic units and exploration of a large tree by zooming into a selected portion. A two-dimensional tree can be drawn by scaling the tree width based on an attribute of the nodes. A tree can be annotated with an associated numerical matrix (as a heat map), multiple sequence alignment, subplots or silhouette images. The package ggtree is released under the artistic-2.0 license. The source code and documents are freely available through bioconductor (http://www.bioconductor.org/packages/ggtree).},
Expand Down

0 comments on commit 75f940a

Please sign in to comment.