Add easyconfig geopandas-1.0.1-foss-2023b.eb

[julianmorillo]

No description provided.

[github-actions]

Updated software geopandas-1.0.1-foss-2023b.eb

Diff against geopandas-0.14.2-foss-2023a.eb

easybuild/easyconfigs/g/geopandas/geopandas-0.14.2-foss-2023a.eb

diff --git a/easybuild/easyconfigs/g/geopandas/geopandas-0.14.2-foss-2023a.eb b/easybuild/easyconfigs/g/geopandas/geopandas-1.0.1-foss-2023b.eb
index 5ba4ab4b61..bf2efdd471 100644
--- a/easybuild/easyconfigs/g/geopandas/geopandas-0.14.2-foss-2023a.eb
+++ b/easybuild/easyconfigs/g/geopandas/geopandas-1.0.1-foss-2023b.eb
@@ -1,7 +1,7 @@
 easyblock = 'PythonBundle'
 
 name = 'geopandas'
-version = '0.14.2'
+version = '1.0.1'
 
 homepage = 'https://geopandas.org'
 description = """GeoPandas is a project to add support for geographic data to pandas objects.
@@ -9,28 +9,28 @@ It currently implements GeoSeries and GeoDataFrame types which are subclasses of
 and pandas.DataFrame respectively. GeoPandas objects can act on shapely geometry objects and
 perform geometric operations."""
 
-toolchain = {'name': 'foss', 'version': '2023a'}
+toolchain = {'name': 'foss', 'version': '2023b'}
 
 dependencies = [
-    ('Python', '3.11.3'),
-    ('Python-bundle-PyPI', '2023.06'),
-    ('SciPy-bundle', '2023.07'),
-    ('Shapely', '2.0.1'),
-    ('Fiona', '1.9.5'),
+    ('Python', '3.11.5'),
+    ('Python-bundle-PyPI', '2023.10'),
+    ('SciPy-bundle', '2023.11'),
+    ('Shapely', '2.0.6'),
+    ('Fiona', '1.10.1'),
     ('pyproj', '3.6.0'),
-    ('matplotlib', '3.7.2'),  # optional
-    ('psycopg2', '2.9.9'),  # optional
-    ('SQLAlchemy', '2.0.25'),  # optional
-    ('networkx', '3.1'),  # needed by mapclassify
-    ('scikit-learn', '1.3.1'),  # needed by mapclassify
+    ('matplotlib', '3.8.2'),  # optional
+    ('psycopg2', '3.1.18'),  # optional
+    ('SQLAlchemy', '2.0.29'),  # optional
+    ('networkx', '3.2.1'),  # needed by mapclassify
+    ('scikit-learn', '1.4.0'),  # needed by mapclassify
     ('numba', '0.58.1'),  # optional, numba extra in mapclassify
 ]
 
 use_pip = True
 
 exts_list = [
-    ('mapclassify', '2.6.1', {
-        'checksums': ['4441798d55a051e75206bf46dccfc8a8f8323aac8596d19961d11660c98677ca'],
+    ('mapclassify', '2.8.1', {
+        'checksums': ['306f4cb99ad1ea166b3efd7180c0a199d240bd801de7937327973d829673bc82'],
         'use_pip_extras': 'numba',
     }),
     (name, version, {

Diff against geopandas-0.12.2-foss-2022b.eb

easybuild/easyconfigs/g/geopandas/geopandas-0.12.2-foss-2022b.eb

diff --git a/easybuild/easyconfigs/g/geopandas/geopandas-0.12.2-foss-2022b.eb b/easybuild/easyconfigs/g/geopandas/geopandas-1.0.1-foss-2023b.eb
index a887dfe6e1..bf2efdd471 100644
--- a/easybuild/easyconfigs/g/geopandas/geopandas-0.12.2-foss-2022b.eb
+++ b/easybuild/easyconfigs/g/geopandas/geopandas-1.0.1-foss-2023b.eb
@@ -1,35 +1,40 @@
 easyblock = 'PythonBundle'
 
 name = 'geopandas'
-version = '0.12.2'
+version = '1.0.1'
 
-homepage = 'https://github.com/geopandas/geopandas'
+homepage = 'https://geopandas.org'
 description = """GeoPandas is a project to add support for geographic data to pandas objects.
 It currently implements GeoSeries and GeoDataFrame types which are subclasses of pandas.Series
 and pandas.DataFrame respectively. GeoPandas objects can act on shapely geometry objects and
 perform geometric operations."""
 
-toolchain = {'name': 'foss', 'version': '2022b'}
+toolchain = {'name': 'foss', 'version': '2023b'}
 
 dependencies = [
-    ('Python', '3.10.8'),
-    ('SciPy-bundle', '2023.02'),
-    ('Shapely', '2.0.1'),
-    ('Fiona', '1.9.2'),
-    ('matplotlib', '3.7.0'),
-    ('pyproj', '3.5.0'),
-    ('networkx', '3.0'),  # needed by mapclassify
-    ('scikit-learn', '1.2.1'),  # needed by mapclassify
+    ('Python', '3.11.5'),
+    ('Python-bundle-PyPI', '2023.10'),
+    ('SciPy-bundle', '2023.11'),
+    ('Shapely', '2.0.6'),
+    ('Fiona', '1.10.1'),
+    ('pyproj', '3.6.0'),
+    ('matplotlib', '3.8.2'),  # optional
+    ('psycopg2', '3.1.18'),  # optional
+    ('SQLAlchemy', '2.0.29'),  # optional
+    ('networkx', '3.2.1'),  # needed by mapclassify
+    ('scikit-learn', '1.4.0'),  # needed by mapclassify
+    ('numba', '0.58.1'),  # optional, numba extra in mapclassify
 ]
 
 use_pip = True
 
 exts_list = [
-    ('mapclassify', '2.4.3', {
-        'checksums': ['51b81e1f1ee7f64a4ca1e9f61f01216c364a3f086a48b1be38eb057199cb19bf'],
+    ('mapclassify', '2.8.1', {
+        'checksums': ['306f4cb99ad1ea166b3efd7180c0a199d240bd801de7937327973d829673bc82'],
+        'use_pip_extras': 'numba',
     }),
     (name, version, {
-        'checksums': ['0acdacddefa176525e4da6d9aeeece225da26055c4becdc6e97cf40fa97c27f4'],
+        'checksums': ['6e71d57b8376f9fdc9f1c3aa3170e7e420e91778de854f51013ae66fd371ccdb'],
     }),
 ]
 

Diff against geopandas-0.12.2-foss-2022a.eb

easybuild/easyconfigs/g/geopandas/geopandas-0.12.2-foss-2022a.eb

diff --git a/easybuild/easyconfigs/g/geopandas/geopandas-0.12.2-foss-2022a.eb b/easybuild/easyconfigs/g/geopandas/geopandas-1.0.1-foss-2023b.eb
index ee3dee5c65..bf2efdd471 100644
--- a/easybuild/easyconfigs/g/geopandas/geopandas-0.12.2-foss-2022a.eb
+++ b/easybuild/easyconfigs/g/geopandas/geopandas-1.0.1-foss-2023b.eb
@@ -1,35 +1,40 @@
 easyblock = 'PythonBundle'
 
 name = 'geopandas'
-version = '0.12.2'
+version = '1.0.1'
 
-homepage = 'https://github.com/geopandas/geopandas'
+homepage = 'https://geopandas.org'
 description = """GeoPandas is a project to add support for geographic data to pandas objects.
 It currently implements GeoSeries and GeoDataFrame types which are subclasses of pandas.Series
 and pandas.DataFrame respectively. GeoPandas objects can act on shapely geometry objects and
 perform geometric operations."""
 
-toolchain = {'name': 'foss', 'version': '2022a'}
+toolchain = {'name': 'foss', 'version': '2023b'}
 
 dependencies = [
-    ('Python', '3.10.4'),
-    ('SciPy-bundle', '2022.05'),
-    ('Shapely', '1.8.2'),
-    ('Fiona', '1.8.21'),
-    ('matplotlib', '3.5.2'),
-    ('pyproj', '3.4.0'),
-    ('networkx', '2.8.4'),  # needed by mapclassify
-    ('scikit-learn', '1.1.2'),  # needed by mapclassify
+    ('Python', '3.11.5'),
+    ('Python-bundle-PyPI', '2023.10'),
+    ('SciPy-bundle', '2023.11'),
+    ('Shapely', '2.0.6'),
+    ('Fiona', '1.10.1'),
+    ('pyproj', '3.6.0'),
+    ('matplotlib', '3.8.2'),  # optional
+    ('psycopg2', '3.1.18'),  # optional
+    ('SQLAlchemy', '2.0.29'),  # optional
+    ('networkx', '3.2.1'),  # needed by mapclassify
+    ('scikit-learn', '1.4.0'),  # needed by mapclassify
+    ('numba', '0.58.1'),  # optional, numba extra in mapclassify
 ]
 
 use_pip = True
 
 exts_list = [
-    ('mapclassify', '2.4.3', {
-        'checksums': ['51b81e1f1ee7f64a4ca1e9f61f01216c364a3f086a48b1be38eb057199cb19bf'],
+    ('mapclassify', '2.8.1', {
+        'checksums': ['306f4cb99ad1ea166b3efd7180c0a199d240bd801de7937327973d829673bc82'],
+        'use_pip_extras': 'numba',
     }),
     (name, version, {
-        'checksums': ['0acdacddefa176525e4da6d9aeeece225da26055c4becdc6e97cf40fa97c27f4'],
+        'checksums': ['6e71d57b8376f9fdc9f1c3aa3170e7e420e91778de854f51013ae66fd371ccdb'],
     }),
 ]
 

[julianmorillo]

Needs PR #22070

[smoors]

@julianmorillo i think this can be moved to the gfbf toolchain as it's not using MPI?

[smoors]

i'm also wondering why you're not using the latest version 1.0.1?

[smoors]

@julianmorillo i think this can be moved to the gfbf toolchain as it's not using MPI?

my bad, this is due to the Fiona dep, which depends on GDAL

i was wrong

[julianmorillo]

i'm also wondering why you're not using the latest version 1.0.1?

I just took geopandas-0.14.2-foss-2023a.eb and modified it for 2023b. I have just made a new commit that uses 1.0.1

[lcniel]

Latest version of mapclassify is 2.8.1, are there issues with that?

[julianmorillo]

Not at all, I upgraded mapclassify version to 2.8.1 in a new commit