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Issues list

PEPATAC looper report Rscript /PEPATAC_summerizer.R error
#310 opened Mar 13, 2025 by moor2562
1
15
assets doesn't exist
#175 opened Mar 29, 2021 by wangjiawen2013
13
TypeError
#216 opened Feb 13, 2022 by namzoo99
11
PEPATACr::createStatsSummary Error
#209 opened Dec 27, 2021 by hadgie
8
error in pepatac.py script awaiting-response Waiting for response from original poster
#299 opened Nov 19, 2024 by ASNbioinf
6
PEPATAC with looper failed with the latest looper and eido
#246 opened Jul 24, 2023 by xuebingjie1990
@donaldcampbelljr
5
Issue submitting samples with alternate genomes
#231 opened Oct 26, 2022 by rylanci
5
problem opening file: -B in preseq with ./configure --enable-hts option awaiting-response Waiting for response from original poster
#280 opened Apr 24, 2024 by h20gg702
@nsheff
4
NameError: name '_LOGGER' is not defined
#266 opened Jan 17, 2024 by atraunbauer
4
Unable to generate count table with reference peaks
#219 opened Mar 25, 2022 by gbloeb
@jpsmith5 @donaldcampbelljr
4
'Pipestat compatible': False, 'Commands submitted': '0 of 2', 'Jobs submitted': 0
#305 opened Jan 15, 2025 by Melody-cell
3
problem rerun using looper and Error in opt_get_verb() -- solved likely-solved
#262 opened Jan 9, 2024 by miximimi
@donaldcampbelljr
3
Problem in creating consensus ATAC peaks
#236 opened Mar 2, 2023 by gauriprasad08
3
Installation conflict with fseq
#224 opened Oct 1, 2022 by AnthonyPhosphate
@jpsmith5
3
Problems with checkinstall for conda installation and pipeline failure
#210 opened Jan 13, 2022 by ndrdenny
3
Create standalone R package enhancement question
#93 opened Apr 25, 2019 by nsheff
5 of 6 tasks
@jpsmith5
3
Extract peak cleaning from pepatac.py into a tools/ script enhancement
#295 opened Nov 9, 2024 by syntonym
2
how can i run looper run without creating env variable '$REFGENIE'
#251 opened Oct 4, 2023 by yqlan
@donaldcampbelljr
2
tutorial to run from singularity is failing with this error:The following required tool(s) are not callable: macs2
#237 opened Mar 5, 2023 by bioarpit1
2
hg38 not exported object from namespace:GenomicDistributionsData
#230 opened Oct 21, 2022 by kloot
2
R.utils not in requirements bug
#229 opened Oct 20, 2022 by nsheff
2
Looper CLI-specified compute settings ignored while running
#208 opened Nov 11, 2021 by boothbyi
2
Difficulty integrating with refgenie or manually downloaded assets
#207 opened Oct 26, 2021 by gbloeb
2
Making pepatac installable brainstorming
#190 opened Jun 10, 2021 by nsheff
2
Issues with run-bulker tutorial
#312 opened Mar 18, 2025 by fbnrst
1
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