Skip to content

Expanded handling for protein strings#20

Open
jeargle wants to merge 4 commits intocounsyl:masterfrom
l7informatics:master
Open

Expanded handling for protein strings#20
jeargle wants to merge 4 commits intocounsyl:masterfrom
l7informatics:master

Conversation

@jeargle
Copy link

@jeargle jeargle commented Jun 15, 2015

These are just a couple of small changes so that more protein HGVS strings can be parsed. I added 1-letter amino acid codes (including '*' for termination) and termination codes for frameshifts.

example HGVS strings:
p.R97G
p.Arg97Glyfs26
p.Arg97GlyfsTer26
p.R97Gfs
26
p.R97GfsTer26

jeargle and others added 4 commits May 28, 2015 14:23
Since PIP 10 has a different module structure, two import calls fail. This change fixes it, while stitll maintaining compatibility with PIP 9 or earlier.
Fix install error when PIP 10 is installed
jtratner pushed a commit that referenced this pull request Nov 20, 2019
Remove kwarg from ValueError
@naegelyd
Copy link
Contributor

@jeargle Sorry for the extremely long delay in looking at this. Can you resolve the merge conflicts here and add your example HGVS strings as test cases in this test section. After that, can take a final pass at this and should be able to get it merged and a new version released.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

4 participants