primer commit :)

.dockerignore

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+.git
+.gitignore
+LICENSE
+README.md
+deploy/db
+tests
+

.gitattributes

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+deploy/db/data.sql.gz filter=lfs diff=lfs merge=lfs -text

.gitignore

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+*~
+.#*
+.DS_Store
+tmp/
+.bak
+
+
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# pyenv
+.python-version
+
+# celery beat schedule file
+celerybeat-schedule
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+#.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+
+# Grunt
+/ui/grunt
+
+# Tests tmp
+/tests/tmp/
+
+# IntelliJ
+.idea/
+
+# VS Code
+.vscode/
+
+# Custom
+deploy/request.json
+typings/
+deploy/ontologies/*.obo
+deploy/ontologies/*.owl*
+.antlr/

Dockerfile

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+##########################
+## Build env
+##########################
+FROM python:3.10-buster AS BUILD
+
+ENV DEBIAN_FRONTEND noninteractive
+
+RUN apt-get update
+#RUN apt-get upgrade -y
+RUN apt-get install -y --no-install-recommends \
+    ca-certificates pkg-config make \
+    libssl-dev libffi-dev libpq-dev
+
+# python packages
+RUN pip install --upgrade pip
+COPY requirements.txt /tmp/requirements.txt
+RUN pip install -r /tmp/requirements.txt
+
+##########################
+## Final image
+##########################
+FROM python:3.10-buster
+
+LABEL maintainer "CRG System Developers"
+LABEL org.label-schema.schema-version="2.0"
+LABEL org.label-schema.vcs-url="https://github.com/EGA-archive/beacon-2.x/"
+
+# Too much ?
+COPY --from=BUILD /usr/local/bin      /usr/local/bin
+COPY --from=BUILD /usr/local/lib      /usr/local/lib
+
+RUN apt-get update && \
+#    apt-get upgrade -y && \
+    apt-get install -y --no-install-recommends \
+    nginx \
+    && \
+    rm -rf /var/lib/apt/lists/* /etc/apt/sources.list.d/nginx.list && \
+    apt-get purge -y --auto-remove
+
+COPY deploy/nginx.conf        /beacon/nginx.conf
+COPY deploy/supervisord.conf  /beacon/supervisord.conf
+COPY deploy/entrypoint.sh     /usr/local/bin/entrypoint.sh
+COPY beacon                   /beacon/beacon
+COPY ui                       /beacon/ui
+
+RUN groupadd beacon                              && \
+    useradd -M -g beacon beacon                  && \
+#    mkdir /beacon                                && \
+    mkdir /var/run/beacon                        && \
+    chown -R beacon:beacon /beacon               && \
+#    chmod 400 /beacon/beacon/conf.py             && \
+    chown -R beacon:beacon /var/log/nginx        && \
+    chown -R beacon:beacon /var/lib/nginx        && \
+    chown -R beacon:beacon /etc/nginx            && \
+    chown -R beacon:beacon /var/run/beacon       && \
+    mkdir -p /var/log/supervisord                && \
+    chown -R beacon:beacon /var/log/supervisord  && \
+    chmod +x /usr/local/bin/entrypoint.sh
+
+WORKDIR /beacon
+USER beacon
+ENTRYPOINT ["/usr/local/bin/entrypoint.sh"]