ENH: Read / Write windows pointers (ANTsX#442)

* ENH: Bump ANTs version to read Windows pointers

* ENH: Run tests on all wheels

.github/workflows/wheels.yml

@@ -1,61 +1,83 @@
 name: Build
 
-on: [push, pull_request]
+on:
+  push:
+    branches:
+    - master
+  pull_request:
+    branches:
+    - master
 
 jobs:
   build_wheels:
-    name: Build wheel for cp${{ matrix.python }}-${{ matrix.platform_id }}
+    name: Build wheel for cp${{ matrix.cibw_python }}-${{ matrix.platform_id }}
     runs-on: ${{ matrix.os }}
     strategy:
       fail-fast: false
       matrix:
         include:
+          # Have to specify python version twice so that the same python is used to build and test
+          # Need to quote decimal versions as string to avoid the "Norway problem"
+
           # Windows 64-bit
           - os: windows-latest
-            python: 37
+            python: '3.7'
+            cibw_python: 37
             platform_id: win_amd64
           - os: windows-latest
-            python: 38
+            python: '3.8'
+            cibw_python: 38
             platform_id: win_amd64
           - os: windows-latest
-            python: 39
+            python: '3.9'
+            cibw_python: 39
             platform_id: win_amd64
           - os: windows-latest
-            python: 310
+            python: '3.10'
+            cibw_python: 310
             platform_id: win_amd64
 
           # Linux 64-bit
           - os: ubuntu-latest
-            python: 37
+            python: '3.7'
+            cibw_python: 37
             platform_id: manylinux_x86_64
           - os: ubuntu-latest
-            python: 38
+            python: '3.8'
+            cibw_python: 38
             platform_id: manylinux_x86_64
           - os: ubuntu-latest
-            python: 39
+            python: '3.9'
+            cibw_python: 39
             platform_id: manylinux_x86_64
           - os: ubuntu-latest
-            python: 310
+            python: '3.10'
+            cibw_python: 310
             platform_id: manylinux_x86_64
           - os: ubuntu-latest
-            python: 311
+            python: '3.11'
+            cibw_python: 311
             platform_id: manylinux_x86_64
 
           # macOS on Intel 64-bit
           - os: macos-latest
-            python: 37
+            python: '3.7'
+            cibw_python: 37
             arch: x86_64
             platform_id: macosx_x86_64
           - os: macos-latest
-            python: 38
+            python: '3.8'
+            cibw_python: 38
             arch: x86_64
             platform_id: macosx_x86_64
           - os: macos-latest
-            python: 39
+            python: '3.9'
+            cibw_python: 39
             arch: x86_64
             platform_id: macosx_x86_64
           - os: macos-latest
-            python: 310
+            python: '3.10'
+            cibw_python: 310
             arch: x86_64
             platform_id: macosx_x86_64
 
@@ -81,7 +103,7 @@ jobs:
       - uses: actions/setup-python@v4
         name: Install Python host for cibuildwheel
         with:
-          python-version: '3.9'
+          python-version: ${{ matrix.python }}
 
         # Visual Studio
       - name: Set up MSVC x64
@@ -110,7 +132,7 @@ jobs:
         env:
           CIBW_MANYLINUX_X86_64_IMAGE: manylinux2014
           CIBW_MANYLINUX_I686_IMAGE: manylinux2014
-          CIBW_BUILD: cp${{ matrix.python }}-${{ matrix.platform_id }}
+          CIBW_BUILD: cp${{ matrix.cibw_python }}-${{ matrix.platform_id }}
 
           # Include latest Python beta
           CIBW_PRERELEASE_PYTHONS: True
@@ -129,9 +151,21 @@ jobs:
           CIBW_ENVIRONMENT_MACOS: |
             CMAKE_OSX_ARCHITECTURES=${{ matrix.arch }}
 
-        run: python -m cibuildwheel --output-dir wheelhouse/cp${{ matrix.python }}-${{ matrix.platform_id }}
+        run: python -m cibuildwheel --output-dir wheelhouse/cp${{ matrix.cibw_python }}-${{matrix.platform_id }}
+
+      - name: Install and test (Linux / Mac)
+        if: ${{ ! startsWith(matrix.os, 'windows-') }}
+        run: |
+          pip install wheelhouse/cp${{ matrix.cibw_python }}-${{matrix.platform_id }}/*.whl
+          tests/run_tests.sh
+
+      - name: Install and test (Windows)
+        if: startsWith(matrix.os, 'windows-')
+        run: |
+          python -m pip install --find-links=.\wheelhouse\cp${{ matrix.cibw_python }}-${{matrix.platform_id }} antspyx
+          tests\run_tests.bat
 
       - uses: actions/upload-artifact@v3
         with:
-          name: ${{ env.PACKAGE_NAME }}-${{ env.PACKAGE_VERSION }}-cp${{ matrix.python }}-${{ matrix.platform_id }}
-          path: ./wheelhouse/cp${{ matrix.python }}-${{ matrix.platform_id }}/*.whl
+          name: ${{ env.PACKAGE_NAME }}-${{ env.PACKAGE_VERSION }}-cp${{ matrix.cibw_python }}-${{ matrix.platform_id }}
+          path: ./wheelhouse/cp${{ matrix.cibw_python }}-${{ matrix.platform_id }}/*.whl

scripts/configure_ANTsPy.bat

@@ -18,7 +18,7 @@ COPY data\* %USERPROFILE%\.antspy
 
 :: clone ANTs and move all files into library directory
 SET antsgit=https://github.com/ANTsX/ANTs.git
-SET antstag=8cb575a08aaab579934ca181134db97cd069fe74
+SET antstag=276cf0717945d3dd3c4298c607d9d6a788ba574e
 echo "ANTS;%antstag%" REM UNKNOWN: {"type":"Redirect","op":{"text":">>","type":"dgreat"},"file":{"text":"./data/softwareVersions.csv","type":"Word"}}
 cd ants\lib
 echo "123"

scripts/configure_ANTsPy.sh

@@ -23,7 +23,7 @@ cp data/* ~/.antspy/
 # clone ANTs and move all files into library directory
 
 antsgit=https://github.com/ANTsX/ANTs.git
-antstag=871cad073908952b095e4b520335fc441e059264
+antstag=276cf0717945d3dd3c4298c607d9d6a788ba574e
 echo "ANTS;${antstag}" >> ./data/softwareVersions.csv
 
 cd ants/lib # go to lib dir

scripts/configure_ANTsPy_windows.sh

@@ -17,7 +17,7 @@ cp data/* ~/.antspy/
 # clone ANTs and move all files into library directory
 
 antsgit=https://github.com/ANTsX/ANTs.git
-antstag=8cb575a08aaab579934ca181134db97cd069fe74 #
+antstag=276cf0717945d3dd3c4298c607d9d6a788ba574e
 echo "ANTS;${antstag}" >> ./data/softwareVersions.csv
 
 cd ants/lib # go to lib dir