see runner

.github/workflows/phoenix.yml

@@ -0,0 +1,35 @@
+name: 'Test on Phoenix'
+
+on:
+    pull_request:
+    workflow_dispatch:
+
+jobs:
+  self:
+    name: Phoenix Runner
+    runs-on:
+        labels: gt
+    if: github.repository == 'Comp-Physics/RBC3D'
+    continue-on-error: true
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      # use mkl option
+      - name: Build Packages
+        run: |
+            ml gcc mvapich2 mkl python/3.9.12-rkxvr6 netcdf-fortran fftw cmake
+            ./rbc.sh install
+
+      # will stop on any errors
+      - name: Compile Cases
+        run: |
+            ml gcc mvapich2 mkl python/3.9.12-rkxvr6 netcdf-fortran fftw cmake
+            set -e -x
+            export PETSC_DIR=`pwd`/packages/petsc-3.19.6
+            export PETSC_ARCH=arch-linux-c-opt
+            mkdir build
+            cd build
+            cmake ..
+            make
+            echo "/common and all cases in /examples compiled successfully!"

.gitignore

@@ -14,4 +14,5 @@ libcommon.a
 field
 packages
 traction
-build
+build
+spherocytes

examples/case/initcond.F90

@@ -89,7 +89,7 @@ program InitCond
     xc(1:2) = 0.
     xc(3) = lengspacing*(iz - 0.5)
     print *, 'Xc', iz, xc
-
+    
     rbc => rbcs(iz)
     rbc%celltype = 1
     call Rbc_Create(rbc, nlat0, dealias)

install/install.sh

@@ -12,9 +12,7 @@ tar -xf petsc-3.19.tar.gz
 cd petsc-3.19.6
 
 # if these configure options don't work, it's probably a path issue
-./configure --with-cc=mpicc \
-    --with-cxx=mpicxx \
-    --with-fc=mpif90 \
+./configure --with-mpi-dir=$MPI_ROOT \
     --with-fortran-datatypes \
     --with-debugging=0 \
     --COPTFLAGS=-g -O3 -march=native -mtune=native \
@@ -24,6 +22,11 @@ cd petsc-3.19.6
     --with-mpiexec=srun \
     --with-x11=0 --with-x=0 --with-windows-graphics=0
 
+if (($?)); then
+    error "PETSc configure failed"
+    exit 1
+fi
+
 make PETSC_DIR=`pwd` PETSC_ARCH=arch-linux-c-opt all
 make PETSC_DIR=`pwd` PETSC_ARCH=arch-linux-c-opt check