update the data collection script to process SV only eQTLS

data_collection.py

@@ -2,17 +2,25 @@
 import argparse
 
 # Set up argument parser
-parser = argparse.ArgumentParser(description='Process a VCF file.')
+parser = argparse.ArgumentParser(description='Process SV and eQTL files.')
 
-# Add argument for file
-parser.add_argument('-f', '--file', type=str, required=True, help='Path to the VCF file (e.g., supporting_variants_for_nstd186.csv.gz)')
+# Add arguments for files
+parser.add_argument('-s', '--sv-file', type=str, required=True, help='Path to the SV CSV file (e.g., sv_data.csv.gz)')
+parser.add_argument('-e', '--eqtl-file', type=str, required=True, help='Path to the eQTL file (e.g., eqtl_table.csv)')
 
 # Parse arguments
 args = parser.parse_args()
 
-# Load the data from the specified file
-vcf_data = pd.read_csv(args.file)
+# Load the SV data from the specified file
+sv_data = pd.read_csv(args.sv_file)
 
-# Display the first few rows of the data
-print(vcf_data.head())
+# Load the eQTL data from the specified file
+eqtl_data = pd.read_csv(args.eqtl_file)
+
+# Display the first few rows of each dataframe to confirm
+print("SV Data:")
+print(sv_data.head())
+
+print("\neQTL Data:")
+print(eqtl_data.head())