Search results

Wrong number of columns in BED file

Status: Open.

#35 In chung-lab/SCAFE;

· dcarrillox opened on Jun 12, 2025

demo output of calculateDirectionality reveals mis-classified directionality?

Status: Open.

#34 In chung-lab/SCAFE;

· mkarikom opened on Jun 14, 2024

Fail to build with singularity

Status: Open.

#33 In chung-lab/SCAFE;

· Elena-TKO opened on May 14, 2024

failed to run scRNA-seq demo data

Status: Open.

#32 In chung-lab/SCAFE;

· Guofeng527220 opened on Apr 17, 2024

How are gene promoter decisions made for unannotated promoters?

Status: Open.

#31 In chung-lab/SCAFE;

· sarahhp opened on Apr 12, 2024

Getting starsolo paired end output to clear (preprocessing script attached)

Status: Open.

#29 In chung-lab/SCAFE;

· ktpolanski opened on Feb 27, 2024

Failed at scafe.workflow.cm.aggregate line 536

Status: Open.

#27 In chung-lab/SCAFE;

· raunakkar opened on Dec 7, 2023

Two very nearby clusters don't get merged, confusion ensues in <code>directionality</code>

Status: Open.

#26 In chung-lab/SCAFE;

· ktpolanski opened on Oct 5, 2023

Reference handling in an automated, multi-sample container setting (with workarounds)

Status: Open.

#25 In chung-lab/SCAFE;

· ktpolanski opened on Aug 15, 2023

Rscript is not installed properly.

Status: Open.

#24 In chung-lab/SCAFE;

· yxsee opened on Jul 14, 2023

scafe.workflow.sc.solo Quitting: Auto detection of TS oligo failed. Average softclip length is ambiguous.

Status: Open.

#23 In chung-lab/SCAFE;

· marsa04 opened on Jun 7, 2023

using 10X references

Status: Open.

#22 In chung-lab/SCAFE;

· ktpolanski opened on May 31, 2023