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irGSEA.score() incompatible with Seurat v5 due to deprecated slot argument

Status: Open.

#57 In chuiqin/irGSEA;

· dfeng4127 opened on Dec 21, 2025

Could not resolve host: zenodo.org

Status: Open.

#55 In chuiqin/irGSEA;

· zhangdong360 opened on Dec 11, 2025

Can I compare two sets of metadata information at the same time in function irGSEA.integrate()?

Status: Open.

#54 In chuiqin/irGSEA;

· Forsyl opened on Feb 27, 2025

Error in irGSEA.integrate

Status: Open.

#52 In chuiqin/irGSEA;

· randystyle21 opened on Dec 12, 2024

Error in irGSEA.integrate(object = pbmc3k.final, group.by = "seurat_annotations", : Please imput correct <code>method</code>.

Status: Open.

#51 In chuiqin/irGSEA;

· RGT183 opened on Nov 13, 2024

split the data by group or do irGSEA analysis directly on the whole

Status: Open.

#50 In chuiqin/irGSEA;

· xjtuZhangKun opened on Sep 4, 2024

Error of the statistical methods when using the irGSEA.halfvlnplot function

Status: Open.

#49 In chuiqin/irGSEA;

· yecotoo opened on Sep 4, 2024

How to solve "Calculate viper scores Error: Windows不支持'mc.cores' &gt; 1 "

Status: Open.

#48 In chuiqin/irGSEA;

· XjtuZhangKun-lab opened on Sep 3, 2024

seurat findmarkers()

Status: Open.

#47 In chuiqin/irGSEA;

· Flu09 opened on Aug 31, 2024

The asterisk and less than sign overlap at the p-value of the legend in the heatmap plot

Status: Open.

#44 In chuiqin/irGSEA;

· antecede opened on May 31, 2024

GSVA error with ssGSEA

Status: Open.

#43 In chuiqin/irGSEA;

· FaehlingT opened on May 23, 2024

Step of integrate differential gene set

Status: Open.

#42 In chuiqin/irGSEA;

· yanjinxing1 opened on Apr 23, 2024