Search results

mkVCF vcfcombine error

Status: Open.

#18 In cbirdlab/dDocentHPC;

· ARW-UBT opened on Dec 22, 2023

dDocentHPC trimmomatic issue

Status: Open.

#17 In cbirdlab/dDocentHPC;

· ARW-UBT opened on Dec 21, 2023

Tabix failed

Status: Open.

#16 In cbirdlab/dDocentHPC;

· Royberts opened on Jan 27, 2022

BWA MEM insert issue

Status: Open.

#15 In cbirdlab/dDocentHPC;

· Royberts opened on Oct 1, 2021

Problem deciding version of bedtools

Status: Open.

#14 In cbirdlab/dDocentHPC;

· cbird808 opened on Nov 9, 2020

enable specification of trimmomatic adapter file

Status: Open.

#13 In cbirdlab/dDocentHPC;

· cbird808 opened on Oct 8, 2020

implement fastp instead of trimmomatic

Status: Open.

#12 In cbirdlab/dDocentHPC;

· cbird808 opened on Oct 8, 2020

Adding PCR and optical duplicate removal to pipeline

Status: Open.

#10 In cbirdlab/dDocentHPC;

· mkent001 opened on Aug 5, 2020

Make Freebayes Run Multinode and Reduce RAM Hogging

Status: Open.

#7 In cbirdlab/dDocentHPC;

· cbird808 opened on May 5, 2020

in mkREF rainbow merge -r and -R cannot be zero and 1

Status: Open.

#6 In cbirdlab/dDocentHPC;

· cbird808 opened on Apr 29, 2020

special_uniq error on some HPC

Status: Open.

#5 In cbirdlab/dDocentHPC;

· cbird808 opened on Oct 16, 2019

Splitting BAM files for parallel freebayes

Status: Open.

#2 In cbirdlab/dDocentHPC;

· jdselwyn opened on Aug 25, 2019