Computational demultiplexing of targeted single-cell sequencing (tapestri) data
To submit the pipeline on an HPC via slurm executor:
sbatch
-n 1
--cpus-per-task=1
--time=48:00:00
--mem-per-cpu=1024
--output="logs/snakelog.$(date +%Y-%m-%d.%H-%M-%S).log"
--open-mode=truncate
--wrap="snakemake -s workflow/Snakefile_analysis -j 500 --configfile configs/multiplex_sims.yaml --executor slurm --rerun-incomplete --drop-metadata --use-conda -k"