Issues

• Isse in importing Qiime2 and Biom dada with "could not find function 'read_biom' " error.

  Not a Bug - Solution Provided
  cafferychen777/MicrobiomeStat#81 · Filter by author jrhaulung opened on Jul 30, 2025
  2

• Different results after linda analysis with newest versions

  documentation
  cafferychen777/MicrobiomeStat#79 · Filter by author SoniaA123 opened on Jun 5, 2025
  3

• Linear model strategy, post hoc tests, and modeling specific taxa in MicrobiomeStat

  By Design
  cafferychen777/MicrobiomeStat#78 · Filter by author lauraflows opened on May 10, 2025
  3

• Missing Adj Variable Term in Coefficient Table from "generate_beta_change_test_pair" function

  Not a Bug - Solution Provided
  cafferychen777/MicrobiomeStat#77 · Filter by author eray-sahin opened on Apr 18, 2025
  1

• Different beta diversity calculation results between microViz and microbiomeStat

  good first issue
  cafferychen777/MicrobiomeStat#76 · Filter by author scilexenko opened on Mar 31, 2025
  1

• Count normalization for generate_taxa_trend_test_long()

  Not a Bug - Solution Provided
  cafferychen777/MicrobiomeStat#74 · Filter by author AlexanderUm opened on Feb 26, 2025
  1

• Con Proportional Hazards Style of Analysis

  enhancement
  cafferychen777/MicrobiomeStat#72 · Filter by author DarioS opened on Feb 7, 2025
  3

• !System command 'Rcmd.exe' failed

  user-environment
  cafferychen777/MicrobiomeStat#70 · Filter by author chongchunwie opened on Nov 9, 2024
  6

• Request to understand the LMM models in alpha, beta diversity and Differencial abundance.

  question
  cafferychen777/MicrobiomeStat#67 · Filter by author OrsonMM opened on Oct 28, 2024
  5

• Weights for Samples of LinDA Modelling

  enhancementgood first issue
  cafferychen777/MicrobiomeStat#59 · Filter by author DarioS opened on Jun 30, 2024
  6

• error while running the generate_beta_trend_test_long function

  bugNot a Bug - Solution Provided
  cafferychen777/MicrobiomeStat#58 · Filter by author yejunbin opened on Jun 26, 2024
  2

• Create Graphs/Analyses without Performing Rarefaction

  enhancement
  cafferychen777/MicrobiomeStat#57 · Filter by author pkirti33 opened on May 30, 2024
  10

• LinDA Unusual p-value Distribution

  good first issue
  cafferychen777/MicrobiomeStat#54 · Filter by author DarioS opened on May 29, 2024
  3

• MicrobiomeStat::generate_beta_test_single represents errors

  Not a Bug - Solution Provided
  cafferychen777/MicrobiomeStat#52 · Filter by author HuaZou opened on May 17, 2024
  2

• Error in midpoint(data.obj$tree) : could not find function "midpoint"

  Not a Bug - Solution Provided
  cafferychen777/MicrobiomeStat#49 · Filter by author nutrimol opened on May 8, 2024
  2

• qiime2 style metadata import error

  Not a Bug - Solution Provided
  cafferychen777/MicrobiomeStat#46 · Filter by author magicprotoss opened on Apr 27, 2024
  1

• Problems with MicrobiomeStat.rdb

  good first issue
  cafferychen777/MicrobiomeStat#40 · Filter by author kuzmpa opened on Mar 20, 2024
  4

• Level of factor missing in output generate_alpha_trend_test_long() function.

  Not a Bug - Solution Provided
  cafferychen777/MicrobiomeStat#36 · Filter by author QGaelle opened on Mar 5, 2024
  3

• Format time.var in generate_alpha_trend_test_long() function

  Not a Bug - Solution Provided
  cafferychen777/MicrobiomeStat#35 · Filter by author QGaelle opened on Feb 29, 2024
  10

• Could not find function "mStat_convert_phyloseq_to_data_obj"

  By DesignNot a Bug - Solution Provided
  cafferychen777/MicrobiomeStat#34 · Filter by author QGaelle opened on Feb 27, 2024
  13

• generate_taxa_test_pair() issue with time.var = NULL in random effect

  By DesignNot a Bug - Solution Provided
  cafferychen777/MicrobiomeStat#33 · Filter by author 16svale opened on Feb 18, 2024
  5

• handling the false discovery rate ("fdr")

  By Design
  cafferychen777/MicrobiomeStat#32 · Filter by author 16svale opened on Feb 18, 2024
  1

• generate_alpha_trend_test_long giving fatal error, aborting R session

  buguser-environment
  cafferychen777/MicrobiomeStat#30 · Filter by author aherms12 opened on Feb 8, 2024
  7

• Error "contrasts can be applied only to factors with 2 or more levels" while using generate_alpha_change_test_pair()

  bugNot a Bug - Solution Provided
  cafferychen777/MicrobiomeStat#29 · Filter by author BiggusDickus666 opened on Feb 6, 2024
  2

• Error: number of observations (=44) <= number of random effects (=44) for term (1 + time | subject)

  By DesignNot a Bug - Solution Provided
  cafferychen777/MicrobiomeStat#26 · Filter by author AlexanderUm opened on Jan 22, 2024
  11