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Add initial IGV_HaplotypeViz WDL workflow for generating IGV screenshots#468

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shadizaheri wants to merge 43 commits intomainfrom
sz_igv_sessions
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Add initial IGV_HaplotypeViz WDL workflow for generating IGV screenshots#468
shadizaheri wants to merge 43 commits intomainfrom
sz_igv_sessions

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@shadizaheri shadizaheri commented Sep 5, 2024

Summary:
Adding initial IGV_HaplotypeViz WDL to generate IGV screenshots.

  • Introduced the IGV_HaplotypeViz workflow to automate IGV screenshot generation
  • Supports both BAM/BAI file alignment and haplotype bam files sequence visualizations
  • Output IGV screenshots for specified regions in the input BED files
  • Compared to the [IGV-snapshot-automator] (https://github.com/stevekm/IGV-snapshot-automator/tree/master) and GATK-SV IGVSingleGenomeScatter workflow, this workflow allows flexibility in BED file formats and includes support for sequence visualizations with haplotype files.

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