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genomics, transcriptomics, evolution, plant sciences, specialized metabolism
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genomics, transcriptomics, evolution, plant sciences, specialized metabolism

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  1. Overview Public

    Overview of repositories associated with @bpucker & @PuckerLab. This covers science communication projects, the developed bioinformatics tools, teaching activities, and project specific repositories.

    1

  2. MYB_annotator Public

    This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new transcriptome of genome assemblies.

    Python 18 5

  3. MGSE Public

    Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

    Python 33 3

  4. KIPEs Public

    Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new transcriptome of genome sequence assembly.

    Python 15 4

  5. teaching Public

    This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.

    51 10

  6. PBBtools Public

    collection of mini tools for the BioinfToolServer

    Python 1 1

203 contributions in the last year

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Contribution activity

March 2025

16 contributions in private repositories Mar 16 – Mar 18
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